PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma135g00370.1 | ||||||||
Common Name | ZOSMA_135G00370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | GeBP | ||||||||
Protein Properties | Length: 396aa MW: 43513.5 Da PI: 7.2777 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 69.7 | 6.1e-22 | 113 | 208 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfs.kehdqkifelsk 93 +f+r+wse De+ +LqGl+ + ++g d++ f++ +++ + +++sql+eK+rr++kKf+ +++++g +ps + ++hd++ +els Zosma135g00370.1 113 KFHRIWSELDEMRFLQGLLAC-GSQGLVFPRDLNVFFDRFSETMTQPYTRSQLSEKLRRFRKKFRVVCSRVARGLDPSTAlSAHDRDLYELST 204 699******************.667888888*********************************************9875389********** PP DUF573 94 kiWg 97 ++W+ Zosma135g00370.1 205 QLWH 208 ***7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.0E-22 | 114 | 208 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MATPPSATPT TSSQHEPHLH IKSAARKLPI KRNPNHNNNP NNHHPNHTPS AAAFSIIVDD 60 GDGGIDQDVV YEEGDEEECY EDDFNSMAVT VFGGGGGGGG GVQLQNSLPA PFKFHRIWSE 120 LDEMRFLQGL LACGSQGLVF PRDLNVFFDR FSETMTQPYT RSQLSEKLRR FRKKFRVVCS 180 RVARGLDPST ALSAHDRDLY ELSTQLWHPS CSDSSPFAQS GPDATKRRKR LPPPPQTPHT 240 PHTPVINKFT IENFIQNSFK PSSSPPLSGR DDKRNVLSLG RESKVVQKAS FGDIESFKAM 300 VAKAILDSFD NSVKELKQDL NKTSAAASTT TTTTCTSSLF LQVNKTSGSG GDLADRWQEQ 360 LAAEFDVHCS RLSQSGLRTI DHHDTLSFLV HHACG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029121387.1 | 5e-53 | undifferentiated embryonic cell transcription factor 1-like | ||||
TrEMBL | A0A0K9PYK1 | 0.0 | A0A0K9PYK1_ZOSMR; DNA-binding storekeeper protein-related transcriptional regulator |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8695 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00390.1 | 2e-08 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Zosma135g00370.1 |