PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma133g00770.1

Common Name

ZOSMA_133G00770

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C3H

Protein Properties

Length: 110aa MW: 12412.6 Da PI: 10.0841

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma133g00770.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	42.1	1.4e-13	3	27	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k+e+Cr+++r G C+yG++CkF H+ Zosma133g00770.1 3 WKREPCRNYQR-GSCRYGNQCKFLHD 27 8********.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.67E-7	2	30	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	17.384	2	29	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.2E-8	2	28	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-10	3	29	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.4E-11	3	27	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
MSWKREPCRN YQRGSCRYGN QCKFLHDDQR QKPNNASQEQ VKPNPFGFGT RSQSQFSNTN 60 QPKQQQKPNP FGFGVQTGST SNTAFSSTNQ SHSQTVCFFP LEKDISLSN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269\|PubMed:18953406, ECO:0000269\|PubMed:22570626}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269\|PubMed:18953406, ECO:0000269\|PubMed:22570626}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278413.1	2e-21	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
Refseq	XP_010278414.1	2e-21	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2
Swissprot	Q5Z807	4e-14	C3H46_ORYSJ; Zinc finger CCCH domain-containing protein 46
TrEMBL	A0A0K9Q152	2e-73	A0A0K9Q152_ZOSMR; Uncharacterized protein
STRING	XP_010278413.1	6e-21	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9447	28	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	2e-13	C3H family protein

Link Out ? help Back to Top
Phytozome	Zosma133g00770.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]