PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma133g00360.1 | ||||||||
Common Name | ZOSMA_133G00360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ARF | ||||||||
Protein Properties | Length: 779aa MW: 87961 Da PI: 6.0219 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.8e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + Zosma133g00360.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHEVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 216 99*****************************86555544..8************************************************..8 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++ +l+++++r Zosma133g00360.1 217 NEKNQLLLGIRR 228 889999999997 PP | |||||||
2 | Auxin_resp | 115.1 | 6e-38 | 254 | 337 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++++ ka+ +++svGmRf+m fete+ss rr++Gt++g+ dldpvrW+nS+Wrs+k Zosma133g00360.1 254 AAHAAATNSRFTIFYNPRASPSEFVIPLSRYAKAVFhTRISVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWSNSHWRSVK 337 79********************************87599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.58E-48 | 114 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-40 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.81E-21 | 127 | 228 | No hit | No description |
Pfam | PF02362 | 3.0E-21 | 128 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.9E-24 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.7E-33 | 254 | 337 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.83E-6 | 675 | 755 | No hit | No description |
PROSITE profile | PS51745 | 21.881 | 681 | 765 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MKVSTVGLGQ LSQEVNEKRC LNSELWHACA GPLVSLPNIG TRVVYFPQGH SEQVAVSTSK 60 EVEGQIPSYP NLPPQLICQL HDVTMHADVE TDEVYAQLTL QPLSVEEQKD NYLPLDMGIP 120 SKQPMNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFT QQPPAQELIA RDLHEVEWKF 180 RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRIN RSQTVMPSSV 240 ISSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LSRYAKAVFH TRISVGMRFR 300 MLFETEESSV RRYMGTITGI GDLDPVRWSN SHWRSVKVGW DESTAGNRQP RVSLWEIEPL 360 TTFPMYPSMF PLRLKRPWHP GASSLQEDGN AFMWLRGDSG DRGLQTLGMS PWVQQRLEPL 420 LVNNENDQYQ SMASAALHDI RNSDDLKQQF LQLQHPFQYS QQPFRNNPLT LQQIIPQMQP 480 QQIQNTQMHC ISESQSQGSS HQDQLQQTYR ESFQIPNNQI QQNQIALSSP LSQKTIFPDT 540 GTNFPQSLPT MQNVMGNLCP EGNANLLTFS RTEPIVSEGQ HQSWDPKFSA SNATTFSNTV 600 PPFLGKDTSL ETEHCNVDSQ NHTLFGVHID PSPFLPTAVP NIDNDITIPY GNPCFQNSLY 660 GCVDETTSLL HSTGETDQQN RTFVKVYKSG SVGRSLDITR FSNYNELRES LGHMFSIEGL 720 LEDPLRSGWQ LVFVDRENDV LLLGDDPWDS FVNNVWYIKI LSPDDVQKME KQCLESFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 13 | 358 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019711032.2 | 0.0 | auxin response factor 12-like isoform X1 | ||||
Refseq | XP_029116083.1 | 0.0 | auxin response factor 12-like isoform X1 | ||||
Refseq | XP_029116084.1 | 0.0 | auxin response factor 12-like isoform X1 | ||||
Refseq | XP_029116085.1 | 0.0 | auxin response factor 12-like isoform X1 | ||||
Refseq | XP_029116086.1 | 0.0 | auxin response factor 12-like isoform X1 | ||||
Swissprot | Q258Y5 | 0.0 | ARFL_ORYSI; Auxin response factor 12 | ||||
TrEMBL | A0A0K9PYV7 | 0.0 | A0A0K9PYV7_ZOSMR; Auxin response factor | ||||
STRING | XP_008804149.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5850 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Zosma133g00360.1 |