PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma132g00300.1
Common NameZOSMA_132G00300
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARR-B
Protein Properties Length: 572aa    MW: 64428.6 Da    PI: 5.9532
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma132g00300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like863.6e-27205258155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr++W+ +LH++Fv av++L G++kA Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Zosma132g00300.1 205 KPRVVWSVDLHRKFVAAVHHL-GIDKAMPKRILDLMNVQKLTRENVASHLQKYRL 258
                       79*******************.********************************8 PP
2Response_reg72.22.1e-24231311109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl vdD+++ ++ll  +l++ +y +v++  ++ +al+ll+ ++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++ + + + 
  Zosma132g00300.1  23 VLAVDDDRVCLKLLDGLLRRCQY-HVTTSNQAIDALNLLRSEKgrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKSVMKGIT 113
                       799********************.***************887778*******************87754.558******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+  eel +
  Zosma132g00300.1 114 HGACDYLLKPVRLEELKN 131
                       ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.1E-1471566IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.3E-4020162No hitNo description
SuperFamilySSF521725.83E-3420141IPR011006CheY-like superfamily
SMARTSM004481.3E-2821133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.94722137IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-2223131IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.71E-2524136No hitNo description
SuperFamilySSF466891.24E-18202262IPR009057Homeodomain-like
PROSITE profilePS5129411.177202261IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-29202263IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-24205258IPR006447Myb domain, plants
PfamPF002491.0E-5207257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MTVEERREGG STSGDKFPVG LRVLAVDDDR VCLKLLDGLL RRCQYHVTTS NQAIDALNLL  60
RSEKGRFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS ANSDPKSVMK GITHGACDYL  120
LKPVRLEELK NIWQHVVRRK KFDCKDTVPI DGTKSGDGTK LGRRKRNDSS DGLHNDNDES  180
EEDVHDNIDN DEDDYDSSSS VQQKKPRVVW SVDLHRKFVA AVHHLGIDKA MPKRILDLMN  240
VQKLTRENVA SHLQKYRLYL KRISTVSTTT AQQQQSRFPN INASLYLRQD GRMQTMSNYN  300
SAVGSGFYNN NLASSGIIQH DNHNLQNLGF SVAMNQPHPN LVQEDMPSSS SINLHHYRNS  360
TPSLQMNRSS SYDSKFNNGK SFHENPSNNT PFLPQPHNLT IGMYPKNNSF GQENNLSKSK  420
NAVVATFPED FQRVEDVRDR DISFGSNPSM SLPAGALSIS NQTWQQRLDN DPIPITNSTY  480
GNNINVNPIT QVGQFGNGDG NKSMMDVCTN TNNSNSRFID DIPTTYTENC NNIEMAESSI  540
KDEQFQWNFT GEYEPFDDLI NTIAKQVEDI W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-25203264364ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027173593.11e-118two-component response regulator ARR12
SwissprotA2X1N21e-108ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-108ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0K9Q1D10.0A0A0K9Q1D1_ZOSMR; Two-component response regulator
STRINGGLYMA04G06650.11e-115(Glycine max)
STRINGXP_007136967.11e-116(Phaseolus vulgaris)
STRINGXP_009599949.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-101response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]