PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma12g00700.1 | ||||||||
Common Name | ZOSMA_12G00700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB_related | ||||||||
Protein Properties | Length: 188aa MW: 21443.8 Da PI: 10.3253 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 40 | 75 | 8 | 44 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 Ed ++ ++v+++G ++W++I + + gR +kqc r Zosma12g00700.1 40 EDAKINELVEKYGCKNWSLIEKSIK-GRIGKQCMQRQ 75 999999******************9.*******9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.77E-8 | 38 | 113 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.7E-10 | 38 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.168 | 39 | 74 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 1.8E-7 | 39 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.55E-6 | 40 | 74 | No hit | No description |
Pfam | PF09811 | 2.7E-9 | 132 | 168 | IPR019191 | Essential protein Yae1, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDLNQPFNSP TGIHFNHPFN TPTGRISNKL PSQRYLQHKE DAKINELVEK YGCKNWSLIE 60 KSIKGRIGKQ CMQRQQYFNE SKLLKLIWTK LSMTIALQQQ NCVGRNKITC KLHLEQHREN 120 EKRNIKFQTI CYRDGLIAGK EASAQEAFNV GFKESVVVGY KFGLVRGVTS TLYGLPKHVK 180 DKLSGST* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PZM5 | 1e-137 | A0A0K9PZM5_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09370.1 | 2e-11 | myb domain protein 3r-3 |
Link Out ? help Back to Top | |
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Phytozome | Zosma12g00700.1 |