PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma12g00480.1 | ||||||||
Common Name | ZOSMA_12G00480 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 29275 Da PI: 6.1698 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.3e-16 | 24 | 70 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g WT eEd+ll+ +v++ G g W+t +++ g+ R++k+c++rw +yl Zosma12g00480.1 24 GQWTSEEDDLLASYVRREGEGKWRTMPKRAGLLRCGKSCRLRWMNYL 70 89*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.4e-15 | 81 | 121 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Zosma12g00480.1 81 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 121 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-21 | 14 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.267 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-27 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-10 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 23 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.08E-9 | 26 | 70 | No hit | No description |
PROSITE profile | PS51294 | 24.397 | 71 | 125 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 73 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 75 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.48E-11 | 81 | 121 | No hit | No description |
Pfam | PF00249 | 7.2E-14 | 81 | 121 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0048354 | Biological Process | mucilage biosynthetic process involved in seed coat development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MREPLKTGRG RGTPCCSKVG LKTGQWTSEE DDLLASYVRR EGEGKWRTMP KRAGLLRCGK 60 SCRLRWMNYL RPSVKRGQIA PDEEDLILRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNTH 120 LSKKLLKQGI DPRTHMPLLN PTCSNQTASA APSARQEAVA VKEEDTPQQV MSKDIGDDDL 180 DVNFSDDMLS GFLDSLVVDV DVFLRQDLTN INPTETLVSS LPPFEHDEFW EQVVHPSAIT 240 LDVNGDVDDH FGRHSDSQI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 21 | 125 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010276363.1 | 1e-85 | PREDICTED: transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 6e-78 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A0K9PZK5 | 0.0 | A0A0K9PZK5_ZOSMR; Myb domain protein 5 | ||||
STRING | GSMUA_Achr6P14840_001 | 2e-86 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13540.1 | 4e-77 | myb domain protein 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma12g00480.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|