PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma128g00060.1 | ||||||||
Common Name | ZOSMA_128G00060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C2H2 | ||||||||
Protein Properties | Length: 189aa MW: 20933.7 Da PI: 9.2853 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.0009 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Zosma128g00060.1 42 FECKTCNRRFPSFQALGGHRASH 64 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.1 | 0.00061 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Zosma128g00060.1 92 HECSICGAEFSVGQALGGHMRRH 114 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.52E-8 | 40 | 114 | No hit | No description |
Pfam | PF13912 | 1.0E-12 | 41 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.4E-4 | 90 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 6.2E-11 | 92 | 116 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.11 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.577 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MKTSIIGEND VNMVDILMLL SRRIDTDHSG SSMQPQALNR TFECKTCNRR FPSFQALGGH 60 RASHKKSKLL AVRHDGSTYL QKQAKLKKPK SHECSICGAE FSVGQALGGH MRRHRDRGNF 120 VGDDSMPSFA SGEHDMYKKK SSSGDDGSSV DAEKKNWGFD LNMKPPVENN DTDELRLLTF 180 TLGFPVLS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PZJ2 | 1e-138 | A0A0K9PZJ2_ZOSMR; Putative Zinc finger protein | ||||
STRING | VIT_13s0019g00480.t01 | 1e-34 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 5e-29 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma128g00060.1 |