PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma127g00050.1
Common NameZOSMA_127G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 281aa    MW: 30666.2 Da    PI: 5.267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma127g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.94.5e-07255277223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ C+ksF++ s L++Hi+  H
  Zosma127g00050.1 255 PCKSCPKSFKTDSALQSHIKAkH 277
                       6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.93254280IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-4255277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280256277IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEFWGVEVKP GQNLVCIPGD DKYIHLSQVS LGHTKKSSKS VPIFVNLGQK KLTIGHLSTE  60
SCFQFSIDLV FEKDFVLSHG SSDGSVYFVG YKSEIPEDDE FQPSTESDEE MVQVPAHEKN  120
CCAKPDLCKP MPMKKPAVPI SKDEDSDEES DDIGDESMSE DDDSEDGVAK RDDKSDEDDS  180
SEEEETPKLL KRKLHKQPAS VTKTPVPAKK TRFATPTAKT GGQEKGGHVD TPHPKKQIFK  240
SPATNASSPS LGNVPCKSCP KSFKTDSALQ SHIKAKHGTN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q1S90.0A0A0K9Q1S9_ZOSMR; Histone deacetylase HDT1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.28e-25histone deacetylase 3