PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma125g00380.1
Common NameZOSMA_125G00380
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 324aa    MW: 36358.5 Da    PI: 6.4237
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma125g00380.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEd +l+ +++++G+g +W + +r++g +R++k+c++rw++yl
  Zosma125g00380.1 14 KGPWSPEEDFKLKTYIEEHGTGgNWIALPRKIGIKRCGKSCRLRWLNYL 62
                      79*******************************55************97 PP
2Myb_DNA-binding37.74.8e-1269111246
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Zosma125g00380.1  69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                       569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.974962IPR017930Myb domain
SuperFamilySSF466892.97E-2611109IPR009057Homeodomain-like
SMARTSM007179.3E-131364IPR001005SANT/Myb domain
PfamPF002493.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231569IPR009057Homeodomain-like
CDDcd001676.23E-101662No hitNo description
PROSITE profilePS5129421.66663117IPR017930Myb domain
SMARTSM007174.8E-1167115IPR001005SANT/Myb domain
PfamPF002491.1E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2370117IPR009057Homeodomain-like
CDDcd001673.61E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDFKLKTYIE EHGTGGNWIA LPRKIGIKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLPA  120
GKRKDSSMAL QMMRGRSNSK DEKKDGGGFS ASAIDRMQLH MQLQGFNNDT CFSFYNRPTA  180
GAEAGTVVGG GVPSIVNASV HHHDQMELNT AVTTKTDEDG DDKNNIDQPL STNNHHDFDD  240
RYSLHAAGYS SSQASNIQKI EGLQYDDLSE FIFGLNSSSS SNRFLEVQEG KQEVVNQDLD  300
FFREMEQESF LLDYNLGTTY IYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223663.13e-95PREDICTED: transcription factor MYB36-like
RefseqXP_008778085.11e-95transcription factor MYB36-like
SwissprotQ9FKL27e-85MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0K9Q2930.0A0A0K9Q293_ZOSMR; Uncharacterized protein
STRINGXP_008223663.11e-94(Prunus mume)
STRINGXP_008778085.15e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.16e-87myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]