PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma124g00230.1 | ||||||||
Common Name | ZOSMA_124G00230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20403.6 Da PI: 7.4987 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.3e-18 | 34 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y GVr+++ +gr++AeIrd + r++lg+f+t eeAa a++ a+++l+g Zosma124g00230.1 34 PKYIGVRRRP-WGRYAAEIRDaI-----TkERHWLGTFDTSEEAAVAYDSAARSLRG 84 79********.**********55.....34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-12 | 34 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.29E-27 | 34 | 91 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.4E-28 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-30 | 35 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.415 | 35 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 35 | 92 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-8 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-8 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDFTASPSPS KQKNKKQPAK KKQHKKQELN GIGPKYIGVR RRPWGRYAAE IRDAITKERH 60 WLGTFDTSEE AAVAYDSAAR SLRGSQARTN FTYGEIPARS SVANATYFSP DDVIENQWVD 120 GGNGYVEYLS SSQNNLYPVM EVVKEGDCRD SELAASPSVF GEQPATGIVS IGSGGGELSD 180 VVFGMTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-19 | 35 | 93 | 14 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00509 | DAP | Transfer from AT5G13910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022980062.1 | 4e-37 | ethylene-responsive transcription factor LEP-like | ||||
TrEMBL | A0A0K9Q2C6 | 1e-136 | A0A0K9Q2C6_ZOSMR; Uncharacterized protein | ||||
STRING | POPTR_0003s07540.1 | 6e-35 | (Populus trichocarpa) | ||||
STRING | cassava4.1_025891m | 4e-35 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1885 | 33 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-35 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma124g00230.1 |