PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma124g00170.1
Common NameZOSMA_124G00170
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 319aa    MW: 35984.6 Da    PI: 7.1613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma124g00170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.68.5e-13241266126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +ktelC+ + +t  C+yGd C+FaHg
  Zosma124g00170.1 241 FKTELCNKWEETAACPYGDHCQFAHG 266
                       79***********************8 PP
2zf-CCCH19.81.4e-06279303125
                       --S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                       ykte+Cr  + +  C+yG rC+F H
  Zosma124g00170.1 279 YKTEICRMVLTGEACPYGHRCHFRH 303
                       9**********66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.63E-10238272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-17238273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873240268IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6240267IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10241266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7274306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-12274304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629278306IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5278305IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSMTSDLHSS LHHCFPDDES FQDLYTSISS PLRNSTIPPT ATNRSFPTPA FLSQTPSSFS  60
EDDGFKISLS STDRRLYLTH FKLQYRELEE RYDLCLSHLK EALREIDVLH LEIVSLRKAN  120
TDLTTYLNSI QSAKSFVDPD SFVNDFRHLS VTDIDSSSPT SVLRCDQISP QQQKNRISLP  180
KSISIRSKVY INASNISNLI SHNQVPNSID ILGTQKVVAK GKMIGEKENN IELEVYGQGM  240
FKTELCNKWE ETAACPYGDH CQFAHGIGEL RPVIRHPRYK TEICRMVLTG EACPYGHRCH  300
FRHALSSDCC FTKGNNGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-20241303466Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279391.15e-76PREDICTED: zinc finger CCCH domain-containing protein 15
TrEMBLA0A0K9Q2C30.0A0A0K9Q2C3_ZOSMR; Zinc finger CCCH domain-containing protein 39
STRINGXP_010279391.12e-75(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-60C3H family protein