PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma123g00770.1
Common NameZOSMA_123G00770
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 464aa    MW: 51438.3 Da    PI: 8.5538
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma123g00770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-16154203155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Zosma123g00770.1 154 SQFRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 203
                       789******************......55************************997 PP
2AP241.34e-13246296155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV+ +k  grW+A+   +     +k+ +lg f+++e+Aa+a+++a+ k +g
  Zosma123g00770.1 246 SKYRGVTLHK-CGRWEARMGQF--L-GKKYLYLGLFDSEEDAARAYDRAAIKCNG 296
                       89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-15154212IPR016177DNA-binding domain
CDDcd000182.50E-23155213No hitNo description
PfamPF008471.0E-8155203IPR001471AP2/ERF domain
PROSITE profilePS5103217.095155211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-16155212IPR001471AP2/ERF domain
SMARTSM003802.5E-31155217IPR001471AP2/ERF domain
PfamPF008475.7E-9246296IPR001471AP2/ERF domain
CDDcd000186.56E-15246306No hitNo description
SuperFamilySSF541712.48E-17246305IPR016177DNA-binding domain
PROSITE profilePS5103216.041247304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-16247304IPR001471AP2/ERF domain
SMARTSM003807.1E-33247310IPR001471AP2/ERF domain
PRINTSPR003674.8E-6248259IPR001471AP2/ERF domain
PRINTSPR003674.8E-6286306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MLDLNLNSTG NKTADISRNN STTSDSSSVL NTEYSSNGFD EQSSSVHCTS VIQFDILKTG  60
YDDASINGGL QLNTPGFTRE FFPAVAPLQP RSYSPAKPNL LSLSMASSSA VFNPQCFDLS  120
FCKPDALEMP QARILQQKQK NVKKSRRGPR SRSSQFRGVT FYRRTGRWES HIWDCGKQVY  180
LGGFDTAHTA ARAYDRAAIK FRGIDADINF NLSDYDEDMI QTRNLSKDEF VHILRRRSTG  240
FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK YLYLGLFDSE EDAARAYDRA AIKCNGKEAV  300
TNFEPSTYEG EVIPDQGIVS HNLDLSLNIS QPVQFVSEGD RNSSSSTTGA IPFTILESTM  360
GNTRSSSVTG QSYHMSMAQE HHPHHVQIVQ EATVAPPPPP PAAFFLPNIE DRAFGNKPVP  420
PMPNWAWQWH NIAQLPLFSS AVSSGFSGAH PSQQPASHPQ FRR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802331.11e-121floral homeotic protein APETALA 2-like
SwissprotQ84TB51e-107AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A0K9Q0A40.0A0A0K9Q0A4_ZOSMR; AP2-like ethylene-responsive transcription factor
STRINGXP_008802331.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-71AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]