PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma123g00270.1
Common NameZOSMA_123G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 385aa    MW: 42384.2 Da    PI: 8.5358
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma123g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.9e-32204257255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Zosma123g00270.1 204 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 257
                       9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15201257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28202257IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-23204257IPR006447Myb domain, plants
PfamPF002492.5E-7205256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MIDRMELFPP HPDLSLQISP PNVKPSTTNT GMTAWRRGTA TATGGGHDDE AMEFDFWRKA  60
IDVNNAAANA SSNSALVKPL AGFDLSLSTT ANITDSTANS NNNLFLHQNH HHHQLQHQHQ  120
HQQPYHSHRD VAAMIRPIRG IPVYQHTPSF PFLHHNHHLL ANGGGGGGVV GGNSFVDTTT  180
VASTAMGRSR FFSRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV  240
KDLTLAHVKS HLQMYRTVKT TDRPPGCSTG SDGFENGSAG EISDDNLLDI HNPQPQESEN  300
STQLRRSPNQ IAEYRARGGL WSNSSRVGWL NSAPRETSTG SVPSFEKYVE PTKCLERLSE  360
MNSSCISENG SMKPNLEFTL GRPH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-16205259357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16205259357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16205259357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16205259357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027360426.11e-105probable transcription factor KAN2 isoform X1
TrEMBLA0A0K9Q0J80.0A0A0K9Q0J8_ZOSMR; Myb family transcription factor-like protein
STRINGEOY251941e-104(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.18e-57G2-like family protein