PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma123g00020.1
Common NameZOSMA_123G00020
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family CO-like
Protein Properties Length: 326aa    MW: 36197.1 Da    PI: 6.0865
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma123g00020.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.11.7e-081558340
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                       r C+ ++  +++lfC+ ++ +lC +C ++ H+       H++v
  Zosma123g00020.1 15 GRECDYCKISPAILFCHPDSAFLCSKCDSSVHEAnklasrHDRV 58
                      689******99*********************767788888876 PP
2zf-B_box30.95.7e-1057103242
          zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       + ++C+ +e+ ++ + C+ ++  lC +C +e H+       H++vp+
  Zosma123g00020.1  57 RVQMCDVCENAPAAFTCKADSASLCVTCDSEVHSAnplarrHDRVPV 103
                       5689*****************************66899999999986 PP
3CCT66.95.8e-23257300144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       R+a++lRY+eKrk+R+FeK+irY+sRKa+Ae RpR+KGrF+kq+
  Zosma123g00020.1 257 RKARVLRYREKRKNRRFEKTIRYASRKAYAEIRPRIKGRFAKQT 300
                       9*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7931360IPR000315B-box-type zinc finger
SMARTSM003361.5E-111360IPR000315B-box-type zinc finger
PfamPF006434.9E-71558IPR000315B-box-type zinc finger
CDDcd000211.30E-61860No hitNo description
PROSITE profilePS5011911.23456103IPR000315B-box-type zinc finger
PfamPF006436.3E-858103IPR000315B-box-type zinc finger
CDDcd000211.07E-860103No hitNo description
SMARTSM003366.5E-1161103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.499257299IPR010402CCT domain
PfamPF062036.2E-17257299IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTAEDGKKSY KGERGRECDY CKISPAILFC HPDSAFLCSK CDSSVHEANK LASRHDRVQM  60
CDVCENAPAA FTCKADSASL CVTCDSEVHS ANPLARRHDR VPVVPFSKPS QIMNDVHGDE  120
DDENGYDESD GRNVKEEEKR MNDFYYYEMK PTTEGGYFFS DVDSYLDLDY AASMDQNCHP  180
HQHHHMTADS VVPGIAVGVA ASFQPPPSFF STVSDYSYSP YSTAASFTHS VSSSEVGVVP  240
NSGSTTTEIS AAVGLDRKAR VLRYREKRKN RRFEKTIRYA SRKAYAEIRP RIKGRFAKQT  300
MIIGMDVDDE NNNAIDSGYG VVPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789696.11e-96zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0K9Q0H70.0A0A0K9Q0H7_ZOSMR; CONSTANS-like protein
STRINGXP_008789696.15e-96(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-75CONSTANS-like 2