PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma122g00780.1 | ||||||||
Common Name | ZOSMA_122G00780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | HB-other | ||||||||
Protein Properties | Length: 201aa MW: 23797.5 Da PI: 10.3671 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 46 | 102 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r+k +++ +eq+e Le++F++n+ p++++r +L +++++++r+Vk+WFqNrR+k+kk Zosma122g00780.1 46 RSKYQRHHPEQIEKLERFFQRNSLPNERQRFDLGMEIKMDTRKVKYWFQNRRTKMKK 102 6788999*************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.67E-17 | 36 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-17 | 39 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.775 | 43 | 103 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-13 | 45 | 107 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.7E-16 | 46 | 102 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.13E-12 | 46 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEQGKMNVMK NGSGSGAIEC VENKQQLTIE EGSRSLIVVT DNTAVRSKYQ RHHPEQIEKL 60 ERFFQRNSLP NERQRFDLGM EIKMDTRKVK YWFQNRRTKM KKQQEQRESA VLKRQNIRYF 120 AENVYLREKL RNPICTICGD ASECKEIPVE AFQLQVENIR LREELQRLSL LRMEILNNNP 180 MFRKSGAMLG KLLFQRRDQV * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 102 | QNRRTKMKKQ |
2 | 94 | 101 | NRRTKMKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9Q2Y5 | 1e-145 | A0A0K9Q2Y5_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 3e-32 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma122g00780.1 |