PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma122g00260.1
Common NameZOSMA_122G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 307aa    MW: 35310.5 Da    PI: 9.0264
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma122g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2292.6e-0961113855
               AP2   8 wdkkrgrWvAeIrd.pse..ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +d+++gr++A+++d   +  n+ k+ k+++lg +  +e Aa+ ++ a++k++g
  Zosma122g00260.1  61 QDRWTGRYEAHLWDkTAWnhNQnKKgKQVYLGAYYDEEAAARTYDLAALKYWG 113
                       799***********666675448556******99999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103215.63348121IPR001471AP2/ERF domain
CDDcd000188.49E-1461123No hitNo description
SuperFamilySSF541712.88E-1161123IPR016177DNA-binding domain
SMARTSM003807.6E-1361127IPR001471AP2/ERF domain
PfamPF008475.7E-661113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-1162122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MLRTPTLHLL FLSRNTSMLM GRRRSAMIRE GFMDARLPKT GSVRYFQTLL GREAPSTEAS  60
QDRWTGRYEA HLWDKTAWNH NQNKKGKQVY LGAYYDEEAA ARTYDLAALK YWGSRTLINF  120
PVSDYSRDLE EMQMASKEDY LLGLRRKNNA SSKVSPKCRR NPRHLKSSRS QGTASSSSVE  180
NKYIGNVISM DGKVDLTSYI SWWSSKRHQP ESITKAHHPI FESLKQYQPT EPYQLPNLEA  240
SHVSEHLAVS AFTILSHSDA FTNFLQKFSE RTEYYDGNHS LVPTEEEPSI LNPDVFLTTL  300
DFNYEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591665.12e-61AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK22e-43AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0K9Q0E50.0A0A0K9Q0E5_ZOSMR; AP2-like ethylene-responsive transcription factor
STRINGXP_008802631.13e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.33e-46AP2 family protein