PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma122g00040.1
Common NameZOSMA_122G00040
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 331aa    MW: 37633.8 Da    PI: 8.7476
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma122g00040.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.44.7e-1554113155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d   +n+   k+ k+++lg ++ ++ Aa+a++ a++k++ 
  Zosma122g00040.1  54 SIYRGVTRHRWTGRFEAHLWDkNGWNQsqnKKgKQVYLGAYDDEKAAARAYDLAALKYWT 113
                       57*******************666677766447**********99************975 PP
2AP254.14e-17156207155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+++lg+f t+eeAaka++ a+ +++g
  Zosma122g00040.1 156 SKYRGVARHHHNGRWEARIGRvF---G-KKYHYLGTFATEEEAAKAYDVAAIEYRG 207
                       89****99**********99967...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-1154113IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1654122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-1455122IPR001471AP2/ERF domain
SMARTSM003801.7E-2255127IPR001471AP2/ERF domain
PROSITE profilePS5103219.21655121IPR001471AP2/ERF domain
PRINTSPR003671.9E-65667IPR001471AP2/ERF domain
CDDcd000188.01E-25156217No hitNo description
PfamPF008474.3E-12156207IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-18156217IPR016177DNA-binding domain
PROSITE profilePS5103218.492157215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-19157216IPR001471AP2/ERF domain
SMARTSM003804.1E-25157221IPR001471AP2/ERF domain
PRINTSPR003671.9E-6197217IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAKVSSSSKN GSSSVTVSKE NGRNTKPVNK TNKKKKRQMN SVSMVSVSQT QRSSIYRGVT  60
RHRWTGRFEA HLWDKNGWNQ SQNKKGKQVY LGAYDDEKAA ARAYDLAALK YWTQATLLNF  120
PVKEYQNEIK EMEGQSLEEY IGSIRRKSSG FSRGVSKYRG VARHHHNGRW EARIGRVFGK  180
KYHYLGTFAT EEEAAKAYDV AAIEYRGMNA ITNFDTSCYI SSPHSIPTTN DPDSSPNQYP  240
ISTDMAHKIE TNLHHDVLLM DDTNTVMNTT VVANEGYRIP LNSSSRCSFP DDVQTYFECD  300
RDVEEDNEDN VLFSELRSFC PAIFQYHHDI *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-115AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-115AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-92AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0K9Q2M10.0A0A0K9Q2M1_ZOSMR; AP2-like ethylene-responsive transcription factor
STRINGXP_008223596.11e-112(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-86AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]