PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma121g00750.1
Common NameZOSMA_121G00750
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 218aa    MW: 25022.7 Da    PI: 7.7692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma121g00750.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-131462148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      rg WT+eEd +l+d +     + +W+t+++  g+ R++k+c++rw +yl
  Zosma121g00750.1 14 RGTWTAEEDRKLIDFILTNKRHcCWRTVPKLAGLLRCGKSCRLRWINYL 62
                      89**************9999889**********99************97 PP

2Myb_DNA-binding513.3e-1672112547
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +  ++++++d++ +lG++ W++Ia+ ++ gRt++++k++w++y
  Zosma121g00750.1  72 SDSDEKIIIDLHSKLGNR-WSKIAAQLP-GRTDNEIKNHWNTY 112
                       7789**************.*********.************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-18564IPR009057Homeodomain-like
PROSITE profilePS5129413.243962IPR017930Myb domain
SuperFamilySSF466897.94E-2411109IPR009057Homeodomain-like
SMARTSM007172.5E-91364IPR001005SANT/Myb domain
PfamPF002495.9E-121462IPR001005SANT/Myb domain
CDDcd001677.31E-61662No hitNo description
PROSITE profilePS5129424.97563117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2465118IPR009057Homeodomain-like
SMARTSM007179.0E-1467115IPR001005SANT/Myb domain
PfamPF002492.5E-1471112IPR001005SANT/Myb domain
CDDcd001672.62E-1072113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MGRQPCCDKV GLKRGTWTAE EDRKLIDFIL TNKRHCCWRT VPKLAGLLRC GKSCRLRWIN  60
YLRPDLKRGM ISDSDEKIII DLHSKLGNRW SKIAAQLPGR TDNEIKNHWN TYIKKKLKKM  120
GVDPDTHHTL VSTAMTDQKQ KEVEQEDEQQ QVKKEEMDII EAVEEILLDD FNDQELKMIS  180
APSSSALFSV KKPADISSVD RWLEDSGCSL WGMEYSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-25121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140299.11e-79PREDICTED: protein ODORANT1
SwissprotQ50EX62e-77ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0K9Q1811e-159A0A0K9Q181_ZOSMR; Uncharacterized protein
STRINGXP_004173153.13e-79(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.14e-78myb domain protein 20
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]