PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma121g00740.1
Common NameZOSMA_121G00740
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 427aa    MW: 48204.6 Da    PI: 8.8044
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma121g00740.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.9e-17177269390
              FAR1   3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y  YA+  GFsvr  +++++    + ++  ++r++ C k+gk +  +  + ++r+++a+ r+gC a++k+k+e  +++w v++++leHnH+l+
  Zosma121g00740.1 177 YYGYASIGGFSVRLGSTNYNtskvDGKKLLVMRRLLCFKKGKVDLLQPVKLSKRHKNAVLRCGCYASVKIKREAmSEEWIVKNIVLEHNHPLT 269
                       899**********9888777564445566899************99998899**********************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-14177269IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MLLINHHIYH NLTLSPKTPF ISLLILSQYI SYHPHIYRPL HAQPLNTPTK HPRPQCNVSL  60
DFYSIQSEKS SGCNPNDTYG NAEYSRNNDF PLISNATYGP HECNDISLDN GQTPISSKTN  120
DVTRLRNANN SSDDASPSFF IHKQPTDTNA SSGSVKVNSP PFVGQIFSSY SDALDQYYGY  180
ASIGGFSVRL GSTNYNTSKV DGKKLLVMRR LLCFKKGKVD LLQPVKLSKR HKNAVLRCGC  240
YASVKIKREA MSEEWIVKNI VLEHNHPLTT PSKVRFLSIN RSILSTSRLL FNSPSEVNVP  300
VSQQTAYFSS QVGGIEHMRC IQLDISNLGR DDRVDFKNYD VNLLVEEFEL KKSVQPDFFS  360
IVEDSTGRLK HVFWDDSIMI QHFKLLGDAV TFDTTYKTNV YSLIFEIFCG VNHHRNTVIF  420
GSAFLR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q0S60.0A0A0K9Q0S6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-30FAR1-related sequence 5