PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma120g00710.1
Common NameZOSMA_120G00710
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family E2F/DP
Protein Properties Length: 354aa    MW: 40021.3 Da    PI: 8.3128
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma120g00710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.41.3e-24139204171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       r+++sL+llt+kf++ll++s++g+++ln++a++L    v  ++RRiYDi+NVL+++++iek+ kn+i+ +g
  Zosma120g00710.1 139 RYDNSLGLLTKKFIDLLRESKDGTLDLNNAAEHL---AV--QKRRIYDITNVLQGVGMIEKNMKNKIKLSG 204
                       689*******************************...99..**************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-25138205IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-30139204IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.5E-15139200IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-22141201IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440743.66E-25218314No hitNo description
CDDcd146608.60E-31218314No hitNo description
PfamPF164214.9E-24221314IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MPNLNESSLP STPHKLSSQI LSSSLDLVPP SLSPSTTPSI PAILLRAPKW RHFRRGMIIT  60
KEEDVNIAIS STATTTISST LEIQNNHFQN GYVMPPRGHS EEVSNYVCPP AKRRKTKFKK  120
EKGVKTTLPD GSIPPITSRY DNSLGLLTKK FIDLLRESKD GTLDLNNAAE HLAVQKRRIY  180
DITNVLQGVG MIEKNMKNKI KLSGFEAIVM PKVLQEYMTS LQAENESLSA EECRLDEMIR  240
KKEEELNILR EDVNTQKLQF ISSEEICNLP CFKNDTLLAI NAPHGTSVEV PDPVEDKCEM  300
SVRSSMGPID CFILRLRVEI VRCRSFRDII LDLISRIMYC CRFYRYILLS ISF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-21134204173PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113120RKTKFKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA cooperatively with DP proteins through the E2 recognition site, 5'-TTTC[CG]CGC-3' found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The binding of retinoblastoma-related proteins represses transactivation. Involved in the control of cell-cycle progression from G1 to S phase and from G2 to M phase. Stimulates cell proliferation and delays differentiation. Represses cell enlargement and endoreduplication in auxin-free conditions. {ECO:0000269|PubMed:11669580, ECO:0000269|PubMed:11786543, ECO:0000269|PubMed:11862494, ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:12913157, ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by light and by auxin. May be up-regulated by E2FA. {ECO:0000269|PubMed:16055635, ECO:0000269|PubMed:16514015, ECO:0000269|PubMed:18424613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FV711e-58E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A0K9Q1110.0A0A0K9Q111_ZOSMR; Uncharacterized protein
STRINGEOY333362e-60(Theobroma cacao)
STRINGXP_008785127.11e-60(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.22e-60E2F transcription factor 1
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Wu M,Liu L,Hijazi H,Chan C
    A multi-layer inference approach to reconstruct condition-specific genes and their regulation.
    Bioinformatics, 2013. 29(12): p. 1541-52
    [PMID:23610368]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]