PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma120g00440.1 | ||||||||
Common Name | ZOSMA_120G00440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | YABBY | ||||||||
Protein Properties | Length: 194aa MW: 21275 Da PI: 8.1669 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 82.5 | 1.3e-25 | 19 | 70 | 4 | 55 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq 55 +s seq+Cyv+CnfC+t+lavsvP+tslfk+vtvrCGhC++llsvn++ + Zosma120g00440.1 19 QSPSEQLCYVHCNFCDTVLAVSVPYTSLFKTVTVRCGHCSNLLSVNMRALHL 70 6789******************************************998773 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.7E-28 | 21 | 144 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MSSSSSSSAA TFSLDHLTQS PSEQLCYVHC NFCDTVLAVS VPYTSLFKTV TVRCGHCSNL 60 LSVNMRALHL PPPLPPPPPP STITQHHQQQ LLIHNHCNLL EEISYSPPPP PPLAPHPVTV 120 TPTPAEKTTP LVNNQSNTVK ESLTLNKRGE DHQQSSLQQP PAVNRRERDR EYHLPTTGSS 180 RKRSNASKLE TQI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018685707.1 | 4e-34 | PREDICTED: protein YABBY 4-like isoform X2 | ||||
TrEMBL | A0A0K9Q0V8 | 1e-135 | A0A0K9Q0V8_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1445 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 4e-24 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma120g00440.1 |