PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma120g00170.1 | ||||||||
Common Name | ZOSMA_120G00170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 304aa MW: 34947.7 Da PI: 10.0648 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.3 | 2.2e-17 | 3 | 89 | 6 | 90 |
FAR1 6 YAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 YA ++GF+vr+ ++k + ++e++ r++ Csk+g++ +++++ +e+++++ ++r gC a++ +++++ + w+v ++ ++HnH+++ Zosma120g00170.1 3 YAGNIGFNVRMGSTKIN--DHEMVGRRLLCSKQGYALSTDTAnnvNERKHQRIRNSRSGCLAMIYISLDRsTRLWRVVNFIEDHNHPMV 89 ************98887..9999************998888777667777788899************99899*************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-15 | 2 | 89 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGYAGNIGFN VRMGSTKIND HEMVGRRLLC SKQGYALSTD TANNVNERKH QRIRNSRSGC 60 LAMIYISLDR STRLWRVVNF IEDHNHPMVT PSKRRYLPIN RVITPLSKAL FKSLNTSNIF 120 PSDQYCVAAQ ETGGFDHMQY TPSDLSNMRR DDRCNIIQRD ADLLIELFEE KKNKSSDYFY 180 SFTRHDNGLR RSIHWNIRGI RYIICYLTLN TISTLPETLV CNRWRAIQSK RPTTSSHITD 240 YKDTGNLRPL FNQLISLVGD SEAKIIYARK ILEDGINSLT DNQTGSKIAK LHRSITRFND 300 SNT* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9Q339 | 0.0 | A0A0K9Q339_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1424 | 4 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-16 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma120g00170.1 |