PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma11g01120.1

Common Name

ZOSMA_11G01120

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

TCP

Protein Properties

Length: 329aa MW: 34080.6 Da PI: 10.0308

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma11g01120.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.4	1.2e-38	68	169	3	104
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...kaak 92 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++ ++ns+ + Zosma11g01120.1 68 AKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStVTVSLRNGGGNSNGYnttQ--- 158 799****************************************************************988855555555555444443331... PP TCP 93 saakskksqksa 104 + +s+ s++s+ Zosma11g01120.1 159 -SSPSSTSTSSS 169 .22222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	73	127	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.1E-33	73	162	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MTTSDGGGAN GADARALPDP HHHHHHHHRH LLQQQQNFQQ QQQPQPLQAV PVGNVSANTA 60 VTTATTVAKK PPAKDRHSKV DGRGRRIRMP IICAARVFQL TRELGHKSDG QTIEWLLRQA 120 EPSIIAATGT GTTPASFSTV TVSLRNGGGN SNGYNTTQSS PSSTSTSSSA FLSDYKSLSQ 180 HHQLAQTPGF APGPFILGKR LRNDESPDNG PKEDNGSGGL GPSGVGVGVG AGGGGGGGGY 240 GVGFGAAGAF WARPEFGQIW SFATPELVQV PPVSGRFTSI PEGGQTIGEA SAARVGNYLP 300 IAQGHLNLLA SLSGPSTHPS GRREDEPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020682551.1	4e-90	transcription factor TCP7
Swissprot	Q9FMX2	5e-66	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0K9Q3P4	0.0	A0A0K9Q3P4_ZOSMR; TCP transcription factor 14
STRING	XP_008787053.1	2e-77	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-47	TCP family protein

Link Out ? help Back to Top
Phytozome	Zosma11g01120.1