PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma11g00600.1

Common Name

ZOSMA_11G00600

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 362aa MW: 39723.5 Da PI: 7.2416

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma11g00600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.4	2e-34	58	203	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp+G++F+Ptd+el+ e+L+++v +++ + + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Zosma11g00600.1 58 LPAGVKFDPTDQELI-EHLEAQVIRSEdqkshplI---DefipTIHGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtae 146 799**********.8899887776645555443...144434776647******.555666799**************856666 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Zosma11g00600.1 147 cgdlqGSETRWHKTGKTRPVVV-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 203 6665544788********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-37	53	222	IPR003441	NAC domain
PROSITE profile	PS51005	32.326	58	222	IPR003441	NAC domain
Pfam	PF02365	3.0E-15	59	203	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MDLCAVGRSM NRNINQNMSS SSYLLIDSKI EEQQMFGYGG VCPNCGYKVE SKPDWVGLPA 60 GVKFDPTDQE LIEHLEAQVI RSEDQKSHPL IDEFIPTIHG EDGICYTHPE KLPGVTRDGL 120 SKHFFHRPSK AYTTGTRKRR KIQTAECGDL QGSETRWHKT GKTRPVVVNG RQKGCKKILV 180 LYTNFGKHRK PEKTNWVMHQ YHLGELEEEK DGELVVSKIF YQTQPRHCNW SAERAATAAA 240 AATAAATSSG GEMHRATVDS GSGSTEIVIG GRDRDDHQVC SIAGFSGYGG AGLLDLTGVI 300 DPTTTTSTAS AFHQISTGGV ISPMITNSNL DIVDPYQRLL LQHNESLHQV KPNSTQLNST 360 Q*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MDLCAVGRSM NRNINQNMSS SSYLLIDSKI EEQQMFGYGG VCPNCGYKVE SKPDWVGLPA  60
GVKFDPTDQE LIEHLEAQVI RSEDQKSHPL IDEFIPTIHG EDGICYTHPE KLPGVTRDGL  120
SKHFFHRPSK AYTTGTRKRR KIQTAECGDL QGSETRWHKT GKTRPVVVNG RQKGCKKILV  180
LYTNFGKHRK PEKTNWVMHQ YHLGELEEEK DGELVVSKIF YQTQPRHCNW SAERAATAAA  240
AATAAATSSG GEMHRATVDS GSGSTEIVIG GRDRDDHQVC SIAGFSGYGG AGLLDLTGVI  300
DPTTTTSTAS AFHQISTGGV ISPMITNSNL DIVDPYQRLL LQHNESLHQV KPNSTQLNST  360
Q*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025700838.1	1e-133	NAC domain-containing protein 75
Refseq	XP_025700839.1	1e-133	NAC domain-containing protein 75
Refseq	XP_025700840.1	1e-133	NAC domain-containing protein 75
Swissprot	Q9M0F8	1e-121	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A0K9Q168	0.0	A0A0K9Q168_ZOSMR; Uncharacterized protein
STRING	XP_008354424.1	1e-129	(Malus domestica)
STRING	XP_006451346.1	1e-128	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-115	NAC domain containing protein 75

Link Out ? help Back to Top
Phytozome	Zosma11g00600.1

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]