PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma118g00150.1 | ||||||||
Common Name | ZOSMA_118G00150, ZOSMA_94G00020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C2H2 | ||||||||
Protein Properties | Length: 177aa MW: 19787.8 Da PI: 10.0019 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 91 | 113 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Zosma118g00150.1 91 HVCNICGIEFSVGQALGCHMRRH 113 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.55E-8 | 39 | 113 | No hit | No description |
Pfam | PF13912 | 3.9E-9 | 39 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.05 | 40 | 62 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.91 | 40 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.3E-6 | 90 | 115 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.764 | 91 | 118 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.51 | 91 | 113 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 93 | 113 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MHNNTLTPRT AMDKVYRQNY HDEKEKQKLI SIFKSSVETF RCKTCGKWFP SFQALGGHRT 60 VHNRPPCKTK RDLQLVMPVS VKSKKMKIAV HVCNICGIEF SVGQALGCHM RRHSKNQKNI 120 IDVGKVVTED NVVVDNSSSD NGLCLELRLS PPDLDVGLLK FSRGSLGFNL NSTNSD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9NIM1 | 1e-128 | A0A0K9NIM1_ZOSMR; Zinc finger protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 4e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma118g00150.1 |