PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma118g00080.1 | ||||||||
Common Name | ZOSMA_118G00080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 315aa MW: 35500.6 Da PI: 8.2325 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 38.9 | 2.9e-12 | 173 | 262 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY Y +GF+vr+ +sk + i +++fvCsk+g++ ++ ++ +k +r++ + r +Ck +k+ + +w+v+ ++++H+Hel Zosma118g00080.1 173 QFYYCYVGYAGFDVRRYSSKLI--DPVIQSKKFVCSKQGESMKKANTdlveCHKINRKSHNVRESCKT-FKIDTD-GINWRVHIFVEHHTHEL 261 69***************98887..999**************999999998777888899999****96.688877.899*************9 PP FAR1 90 a 90 + Zosma118g00080.1 262 V 262 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-8 | 173 | 262 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MFPLKWLETL SVILVKPLSF KPFKPMSSTS PNHCSFNGSN HCFFKGSNHC SSKRSNHYSS 60 DGSNHCSSNG SNHCPSDSPN HYSTDGFNHC SSNSSNHFVD YNLFMPFITL SFTSDILLFH 120 RVAMDDDVHT SISIDSPSRN TNALSIVNSN DTSPPPPIPY VGQIFPDLES DRQFYYCYVG 180 YAGFDVRRYS SKLIDPVIQS KKFVCSKQGE SMKKANTDLV ECHKINRKSH NVRESCKTFK 240 IDTDGINWRV HIFVEHHTHE LVTPRKRHFL CVNRHMSSTS RGLLDSLNSA HIQPSQQYSY 300 AAMDSGGFSN LSYT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9Q1I0 | 0.0 | A0A0K9Q1I0_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1424 | 4 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-15 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma118g00080.1 |