PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma117g00720.1 | ||||||||
Common Name | ZOSMA_117G00720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 35538.8 Da PI: 6.9853 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.3 | 6.1e-53 | 11 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 l+pGfrFhP+deel+++yL+kk++g++ ++ +++++vd++k+ePwdLp ++ + kewyfF+ rd+kyatg+r+nrat sgyWkatgkd Zosma117g00720.1 11 LAPGFRFHPRDEELINDYLAKKIAGTTtgddFNSLDMMEDVDLNKIEPWDLPDNTCVGGKEWYFFCLRDRKYATGQRTNRATLSGYWKATGKD 103 579**********************998888677789***************7666789********************************** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v++ +g+lvg++ktLvfy+grapkg+ktdWvmhe+r+ Zosma117g00720.1 104 RHVTDGgkGGRLVGMRKTLVFYRGRAPKGKKTDWVMHEFRM 144 ****97778888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-58 | 3 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.938 | 11 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-26 | 13 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MSFLSMMESK LAPGFRFHPR DEELINDYLA KKIAGTTTGD DFNSLDMMED VDLNKIEPWD 60 LPDNTCVGGK EWYFFCLRDR KYATGQRTNR ATLSGYWKAT GKDRHVTDGG KGGRLVGMRK 120 TLVFYRGRAP KGKKTDWVMH EFRMELEDTL YSSCLNHSSN NNDWVLCRVF CKTRSRGTGI 180 SGDCKDDVSS SSSLPSLINT YINFDQPNTH MQYGFNQERV PCFSNILNGT GLLTPPAPMP 240 STSNTASGRR FPADATATSL WSVPPLTNFV FDEKSLDKDL NFNYDQTERI GRSSESCNFA 300 ENPFVGQQSM WNPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-49 | 6 | 175 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-49 | 6 | 175 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-49 | 6 | 175 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-49 | 6 | 175 | 12 | 168 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-49 | 6 | 175 | 12 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-49 | 6 | 175 | 12 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419008.2 | 3e-90 | PREDICTED: NAC domain-containing protein 21/22 isoform X1 | ||||
Refseq | XP_018686778.1 | 3e-90 | PREDICTED: NAC domain-containing protein 21/22 isoform X2 | ||||
Swissprot | Q84TE6 | 9e-74 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0K9Q252 | 0.0 | A0A0K9Q252_ZOSMR; NAC domain-containing protein 21/22 | ||||
STRING | GSMUA_Achr9P26140_001 | 1e-89 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 4e-71 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Zosma117g00720.1 |