PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma117g00480.1
Common NameZOSMA_117G00480
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 266aa    MW: 30379 Da    PI: 7.9093
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma117g00480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.41e-3081134255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       prlrW+p+LH +Fv+av++LGG+++AtPk +l++m+v gL+++hvkSHLQ+YR+
  Zosma117g00480.1  81 PRLRWNPDLHMAFVRAVDRLGGQDRATPKLVLQMMDVRGLSIAHVKSHLQMYRT 134
                       8****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.79877137IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2877135IPR009057Homeodomain-like
SuperFamilySSF466894.48E-1379135IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-2181136IPR006447Myb domain, plants
PfamPF002497.7E-782133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSGGMGKEEE EEGEEEEISN EETFRRRPKK RVCFDLNQGI DEEEEENGGS GSCSNHSCNE  60
GSSSGDQRTS SVRPYNRSKM PRLRWNPDLH MAFVRAVDRL GGQDRATPKL VLQMMDVRGL  120
SIAHVKSHLQ MYRTKKLDDS GQEKFTNSSG STVFVFSSDR LTCNCIYLII IIYICADITR  180
IRQGADHPIL DINFYHRNHT VFSNPYHPPF NFENRVLDTR NHHVIPSVRN PYTTLLQSHP  240
SLHQPFDPVK TLNRRNGQLT SSRKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-1982136357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1982136357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1982136357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1982136357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028761716.12e-41uncharacterized protein LOC114720249
RefseqXP_028761717.12e-41uncharacterized protein LOC114720249
RefseqXP_028761718.12e-41uncharacterized protein LOC114720249
TrEMBLA0A0K9Q2290.0A0A0K9Q229_ZOSMR; Uncharacterized protein
STRINGEMJ172401e-41(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44083671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-36G2-like family protein