PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma115g00200.1
Common NameZOSMA_115G00200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 431aa    MW: 48911.8 Da    PI: 6.8436
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma115g00200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.58.9e-15239298155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+ ++ a++k++g
  Zosma115g00200.1 239 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARSYDLAALKYWG 298
                       78*******************655454478446*************************98 PP

2AP245.42e-14342392255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     ++  +lg+f t eeAa+a++ a+ k++g
  Zosma115g00200.1 342 AYRGVTRHHQHGRWQARIGRVAG---NRDLYLGTFSTQEEAAEAYDIAAIKFRG 392
                       69***************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-16239308IPR016177DNA-binding domain
PfamPF008472.4E-11239298IPR001471AP2/ERF domain
CDDcd000181.35E-20239308No hitNo description
Gene3DG3DSA:3.30.730.101.1E-14240307IPR001471AP2/ERF domain
SMARTSM003807.6E-27240312IPR001471AP2/ERF domain
PROSITE profilePS5103219.072240306IPR001471AP2/ERF domain
PRINTSPR003674.5E-6241252IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-17341400IPR016177DNA-binding domain
CDDcd000186.39E-25341401No hitNo description
Gene3DG3DSA:3.30.730.104.9E-18342400IPR001471AP2/ERF domain
PfamPF008471.8E-9342392IPR001471AP2/ERF domain
SMARTSM003806.6E-33342406IPR001471AP2/ERF domain
PROSITE profilePS5103219.006342400IPR001471AP2/ERF domain
PRINTSPR003674.5E-6382402IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDKGGCPVVG FSLSSTQHHH DPILHSIREK ASCVDGSEKE EDCRRKSGDV PVVFPSLLRL  60
PESSLFMANY GSGTEDWMHR NTIDVSNNII SSTASTGSVE GRRDQNFLSL YKAENNHNSM  120
EQQYNYFIPV SSDQEIYNRN NNLITFPLVE DYERIQSDLQ ENDFHNDVYN NEVVSPLQQN  180
PSSVVLNFNW SENHTITNFS PLTQSMDPSS SMQTSDDDPK RSKKMVSFKS NDNFGQRTSQ  240
YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQVYLGGYD KEEKAARSYD LAALKYWGPT  300
SFVNFPISTY EKELVEMKNL SRQEFVANLR RRSSGFSRGA SAYRGVTRHH QHGRWQARIG  360
RVAGNRDLYL GTFSTQEEAA EAYDIAAIKF RGVNAVTNFD IIRYDVERIC SKSTALIAGD  420
NATETSSSEA *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020219986.11e-126AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0K9Q2F50.0A0A0K9Q2F5_ZOSMR; Uncharacterized protein
STRINGXP_007135445.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-102AP2 family protein