PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma115g00200.1 | ||||||||
Common Name | ZOSMA_115G00200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 431aa MW: 48911.8 Da PI: 6.8436 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.5 | 8.9e-15 | 239 | 298 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+ ++ a++k++g Zosma115g00200.1 239 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARSYDLAALKYWG 298 78*******************655454478446*************************98 PP | |||||||
2 | AP2 | 45.4 | 2e-14 | 342 | 392 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + ++ +lg+f t eeAa+a++ a+ k++g Zosma115g00200.1 342 AYRGVTRHHQHGRWQARIGRVAG---NRDLYLGTFSTQEEAAEAYDIAAIKFRG 392 69***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.18E-16 | 239 | 308 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-11 | 239 | 298 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.35E-20 | 239 | 308 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-14 | 240 | 307 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-27 | 240 | 312 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.072 | 240 | 306 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 241 | 252 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-17 | 341 | 400 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.39E-25 | 341 | 401 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-18 | 342 | 400 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-9 | 342 | 392 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-33 | 342 | 406 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.006 | 342 | 400 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-6 | 382 | 402 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 431 aa Download sequence Send to blast |
MDKGGCPVVG FSLSSTQHHH DPILHSIREK ASCVDGSEKE EDCRRKSGDV PVVFPSLLRL 60 PESSLFMANY GSGTEDWMHR NTIDVSNNII SSTASTGSVE GRRDQNFLSL YKAENNHNSM 120 EQQYNYFIPV SSDQEIYNRN NNLITFPLVE DYERIQSDLQ ENDFHNDVYN NEVVSPLQQN 180 PSSVVLNFNW SENHTITNFS PLTQSMDPSS SMQTSDDDPK RSKKMVSFKS NDNFGQRTSQ 240 YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK GRQVYLGGYD KEEKAARSYD LAALKYWGPT 300 SFVNFPISTY EKELVEMKNL SRQEFVANLR RRSSGFSRGA SAYRGVTRHH QHGRWQARIG 360 RVAGNRDLYL GTFSTQEEAA EAYDIAAIKF RGVNAVTNFD IIRYDVERIC SKSTALIAGD 420 NATETSSSEA * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020219986.1 | 1e-126 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A0K9Q2F5 | 0.0 | A0A0K9Q2F5_ZOSMR; Uncharacterized protein | ||||
STRING | XP_007135445.1 | 1e-124 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-102 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma115g00200.1 |