PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma115g00150.1 | ||||||||
Common Name | ZOSMA_115G00150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 230aa MW: 27155.3 Da PI: 10.1051 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 4 | 49 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+++v+++G+++W+ Iar + gR++k+c++rw++ Zosma115g00150.1 4 RGHWRPSEDEKLKELVNKHGPHNWNGIARNLH-GRSGKSCRLRWFNQ 49 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55 | 1.9e-17 | 56 | 98 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r ++T+eE+e+l++ ++ +G++ W+ Iar + gRt++ +k++w+ Zosma115g00150.1 56 RSPFTEEEEERLIESHRIHGNR-WSVIARLFK-GRTDNAVKNHWH 98 789*******************.********9.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.808 | 1 | 54 | IPR017930 | Myb domain |
SMART | SM00717 | 9.5E-15 | 3 | 52 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.1E-29 | 4 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-17 | 4 | 49 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-27 | 5 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.24E-13 | 7 | 48 | No hit | No description |
SMART | SM00717 | 1.5E-14 | 55 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.011 | 55 | 105 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.5E-14 | 56 | 98 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-20 | 58 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.46E-6 | 58 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MCTRGHWRPS EDEKLKELVN KHGPHNWNGI ARNLHGRSGK SCRLRWFNQL DPRINRSPFT 60 EEEEERLIES HRIHGNRWSV IARLFKGRTD NAVKNHWHVI EARRSRERTR FLCKMRKTVD 120 HHRPMSEKIL NCPKQPSTTA QFFFTHPHHH HRRHPFYFGI KTPESDENSS ADRNSIRFHD 180 FLRLNNEDEE GGRESEGKWI GKKVDTMEES DKAAGTSRDF IDFMAESNG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 2 | 104 | 5 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010276273.1 | 6e-73 | PREDICTED: transcriptional activator Myb-like | ||||
Swissprot | Q6R0C4 | 2e-64 | MYB52_ARATH; Transcription factor MYB52 | ||||
TrEMBL | A0A0K9Q2F2 | 1e-169 | A0A0K9Q2F2_ZOSMR; Uncharacterized protein | ||||
STRING | XP_010276273.1 | 2e-72 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 1e-61 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Zosma115g00150.1 |
Publications ? help Back to Top | |||
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