PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma114g00060.1
Common NameZOSMA_114G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 299aa    MW: 34061.4 Da    PI: 8.8239
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma114g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.62.2e-091241932290
              FAR1  22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       ++ ++  +++++ Csk+g++      t+++rr++ + r+gC  ++k k+ + +++w+ ++++ +HnH+++
  Zosma114g00060.1 124 ETGQKILVMKRLLCSKQGNPILIFPLTNDTRRKNGVFRCGCLTSIKFKRIYrSDNWVTDSVNFDHNHPFT 193
                       4456667899**********998888999*********************99***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-6124193IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MASPTSFGNE HRSTSLQVSS NTNSIFVTPP LYRSQQFTYD YTNTSCNVSL KFHFNSSQCQ  60
TNDNTIPSKV DFSTSLDPDA FASTVFQSDF VECTSAEIRE SSTNMSYGTA KIPNRSTKNI  120
LDKETGQKIL VMKRLLCSKQ GNPILIFPLT NDTRRKNGVF RCGCLTSIKF KRIYRSDNWV  180
TDSVNFDHNH PFTTPSKIRY LPINRSISHT SKLLFSSLAE VNVSISQQTA YFSNQLGGPQ  240
NMSCMTLDIN NMVRDDRIDL KNYDVDLIVE EFEMKKLKNR NFFYDLVKDD QGRLKHLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2562141e-125AC256214.1 Zostera marina clone XTP02-B06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q2I30.0A0A0K9Q2I3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-11FAR1-related sequence 5