PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma113g00270.1
Common NameZOSMA_113G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 280aa    MW: 30686.2 Da    PI: 9.8704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma113g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.2e-171663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l  +++++G g+W+  +++ g+ R++k+c++rw +yl
  Zosma113g00270.1 16 KGPWTAEEDQILSAYIHEHGHGSWRVLPAKAGLQRCGKSCRLRWTNYL 63
                      79********************************************97 PP
2Myb_DNA-binding48.61.9e-1569114148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ +E++ +++++++lG++ W++Ia ++  +Rt++++k++w+++l
  Zosma113g00270.1  69 RGKFSVQEEQTIIQLHALLGNR-WSAIATYLA-KRTDNEIKNYWNTHL 114
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-23866IPR009057Homeodomain-like
PROSITE profilePS5129415.0971163IPR017930Myb domain
SuperFamilySSF466891.36E-2815110IPR009057Homeodomain-like
SMARTSM007178.2E-131565IPR001005SANT/Myb domain
PfamPF002492.7E-151663IPR001005SANT/Myb domain
CDDcd001671.08E-91863No hitNo description
PROSITE profilePS5129425.65664118IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2567118IPR009057Homeodomain-like
SMARTSM007178.1E-1668116IPR001005SANT/Myb domain
PfamPF002497.8E-1569114IPR001005SANT/Myb domain
CDDcd001673.31E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTTSRSHCSE NLVLKKGPWT AEEDQILSAY IHEHGHGSWR VLPAKAGLQR CGKSCRLRWT  60
NYLRPDIKRG KFSVQEEQTI IQLHALLGNR WSAIATYLAK RTDNEIKNYW NTHLKKKLEK  120
MGLDSVTHKK KTDGLCGEVG SPFSKNTANL NHMAQWESAR LEAEARLVRH SKLLQSTPTN  180
NSSNTTTTTS PARSVWSYIG GGVVESPTST LTALSFDNNC NNNSEKNVGL RPSASRIFGP  240
SGGGGDGNPS GSSDENKNYW NNILDLANSG NQSGSPAIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141195109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007217733.11e-96myb-related protein Zm38
RefseqXP_016679736.15e-97PREDICTED: protein ODORANT1-like
SwissprotQ9LE635e-94MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0K9Q5040.0A0A0K9Q504_ZOSMR; Myb domain protein 16
STRINGEMJ189324e-96(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-91myb domain protein 106