PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma112g00420.1
Common NameZOSMA_112G00420
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 360aa    MW: 39423.9 Da    PI: 7.3985
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma112g00420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.32.7e-31207262156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+peLH+rF++a++qLGGs++AtPk+i+elmkv+gL++++vkSHLQkYRl+
  Zosma112g00420.1 207 KARRCWSPELHRRFLHALKQLGGSHVATPKQIRELMKVDGLSNDEVKSHLQKYRLH 262
                       68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.49204264IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-27205265IPR009057Homeodomain-like
SuperFamilySSF466891.17E-17205265IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-25207262IPR006447Myb domain, plants
PfamPF002492.8E-7209260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTGLVEEKGA GVRRWREYLD ALEEERKKIH VFQRELPLCL QLVTQTIESY RQQIGCEGDV  60
ATSSDVPVLE EFVPINRCSS VEEEESSHEN ESKSMKRLSC GGGLEQQHGG EGGGKSSENK  120
TPHWMQSVHL SIRTPNSSDE ETELMKPISL DSGKERGAFH PFHRDRKIAP HVADISLTVP  180
TVSSTADTDT RGRRGFEGKD QGNSHRKARR CWSPELHRRF LHALKQLGGS HVATPKQIRE  240
LMKVDGLSND EVKSHLQKYR LHTKRPNSTT GSCQTPQFIL MGGIWVPPSE YASAADTDAP  300
PVTVSDATPV SRIYAPVASV PLGSSQSNAK KTDVNSQSGE GGCRTDSSSP STSRSSLIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-13207260154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-13207260154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-13207260154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-13207260154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00160DAPTransfer from AT1G25550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003631224.13e-93PREDICTED: myb family transcription factor EFM
SwissprotQ6Z8693e-74NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLA0A0K9Q2U70.0A0A0K9Q2U7_ZOSMR; Myb transcription factor
STRINGVIT_01s0011g03110.t017e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68670.11e-71G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]