PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma112g00280.1
Common NameZOSMA_112G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 372aa    MW: 39756.8 Da    PI: 9.1242
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma112g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.2e-4182157176
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                       +CqvegC +dl++ak y+rrhkvC +hsk+p+v+v+g+eqrfCqqCsrf +l efD++krsCrrrLa+hnerrrk+
  Zosma112g00280.1  82 RCQVEGCGQDLTSAKAYYRRHKVCGTHSKSPKVTVAGIEQRFCQQCSRFQQLPEFDQGKRSCRRRLAGHNERRRKP 157
                       6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.6E-3475144IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.65880157IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.15E-3981160IPR004333Transcription factor, SBP-box
PfamPF031104.5E-3283156IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MEGSRCLGAG GAGEDDSSGP SGLKFGKKIY FEDLGNNTQT PSSSSSSFSP MKDPPPPTLG  60
SSSSGRRGRG MGQSGEMQQP PRCQVEGCGQ DLTSAKAYYR RHKVCGTHSK SPKVTVAGIE  120
QRFCQQCSRF QQLPEFDQGK RSCRRRLAGH NERRRKPPSG PFSSRFGQLS SSSFHVSSED  180
GGRFGGYLMD FSRPRLPGHG RDMWAATGTG GRSMAGDQWV RTSQVISPYN TQVGSTSGGG  240
LFAGHEIPPD ECPRNSDSSC ALSLLSTQPW GTTTTTTTAS VAGTSNYGAG TLSMMGQTSN  300
PANFLDNPWT TTNRHPYPNP PRGLSMSIPV NHIAGFGDPM DPGRGQFSDD PEHGRRYDPS  360
SSGHLNWPPP H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-29831561184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008782879.19e-94squamosa promoter-binding-like protein 17
TrEMBLA0A0K9Q2Z30.0A0A0K9Q2Z3_ZOSMR; SQUAMOSA promoter binding protein-like protein
STRINGXP_008782879.13e-93(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.19e-35squamosa promoter binding protein-like 9