PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma10g01610.1
Common NameZOSMA_10G01610
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 445aa    MW: 49847.9 Da    PI: 6.8594
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma10g01610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.63.3e-129494381373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lL++c ++vs++d++ a+a+L+++s las dgd+mqR+a++f+ ALa rl++s +++ykal+ ++ +  +++e+ +++++f++++P+ k+s
  Zosma10g01610.1  49 LIHLLVNCCNHVSTRDFATANAFLEQISLLASADGDTMQRMASFFADALACRLLKSFPGVYKALHNTRPA--SVAETHTVRRYFFDLCPFTKLS 140
                      689*************************************************************766665..499999999************* PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                       ++ N+a+lea+ege++vHiiD+++    QW+aLl+ ++sR+egpp+lRiTgv++    +ke le+t+ rL++ Ae+l+vpf+fn+ v+++le+
  Zosma10g01610.1 141 VVVFNKALLEAMEGEKMVHIIDLNAWDASQWIALLHMFSSREEGPPHLRITGVHE----QKEVLEQTAARLSEAAEQLDVPFQFNP-VVSKLEN 229
                      *******************************************************....9**************************.799**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll.......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                      l+ ++Lrvk+gEala+n++lqlh ll                       + s+s + +++++L +++slsPk++ v+e+e++hn++ + erf+e
  Zosma10g01610.1 230 LDANTLRVKTGEALAINSILQLHPLLtsdsddarktrtpstsptngnplSLSLSPSTKIESFLTMLWSLSPKIMLVAENESSHNKPILTERFTE 323
                      *********************************************9999445555556688********************************* PP

             GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                      al+yy+alfd+le++++r s er kvEr l+g ei+n++aceg er++rhe+le+W +r+e++GF++v +s++a +  ++ll+ +  dgy+v+e
  Zosma10g01610.1 324 ALNYYAALFDCLESTVARGSTERGKVERTLFGGEIRNIIACEGGERKARHERLERWTKRMEAVGFGKVGFSYDALCHSRMLLHSFRCDGYKVKE 417
                      *********************************************************************************************7 PP

             GRAS 354 e.sgslvlgWkdrpLvsvSaW 373
                      + sgs++l+W+++pL+svSaW
  Zosma10g01610.1 418 DdSGSFMLCWQNHPLFSVSAW 438
                      6489999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.82623418IPR005202Transcription factor GRAS
PfamPF035141.2E-12649438IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MTGMIQQEHE QQGSSPLHHF SLMPISPSAT TRPPWLQTEL SSADRGLLLI HLLVNCCNHV  60
STRDFATANA FLEQISLLAS ADGDTMQRMA SFFADALACR LLKSFPGVYK ALHNTRPASV  120
AETHTVRRYF FDLCPFTKLS VVVFNKALLE AMEGEKMVHI IDLNAWDASQ WIALLHMFSS  180
REEGPPHLRI TGVHEQKEVL EQTAARLSEA AEQLDVPFQF NPVVSKLENL DANTLRVKTG  240
EALAINSILQ LHPLLTSDSD DARKTRTPST SPTNGNPLSL SLSPSTKIES FLTMLWSLSP  300
KIMLVAENES SHNKPILTER FTEALNYYAA LFDCLESTVA RGSTERGKVE RTLFGGEIRN  360
IIACEGGERK ARHERLERWT KRMEAVGFGK VGFSYDALCH SRMLLHSFRC DGYKVKEDDS  420
GSFMLCWQNH PLFSVSAWNC RRFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-685544125381Protein SCARECROW
5b3h_A2e-685544124380Protein SCARECROW
5b3h_D2e-685544124380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273289.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR81e-158SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0K9Q5Q60.0A0A0K9Q5Q6_ZOSMR; Scarecrow-like protein 3
STRINGXP_010273289.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-158scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]