PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma10g01270.1
Common NameZOSMA_10G01270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 1082aa    MW: 120630 Da    PI: 7.983
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma10g01270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.2e-40158235178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqv++C+adls+ak+yhrrhkvCevhsk+++++v +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk qa
  Zosma10g01270.1 158 MCQVDECKADLSSAKDYHRRHKVCEVHSKTTKAVVGKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKVQA 235
                      6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.9E-34152220IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.855156233IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.4E-37157236IPR004333Transcription factor, SBP-box
PfamPF031108.6E-30159232IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1082 aa     Download sequence    Send to blast
MEGVEMDAQR VTPILLHQTR FHEIVAPPLA RKRDSSMWAN SNYHQQQQQH HQHQLQTQMQ  60
KHAIRPSTNN NWNCKMWDWD SVAFVAKPSL DVSDRDLGLN NSSEGDKNQK GLGLDVRSDE  120
CLTLKLGGGS YVAAEETIVR PSKRVRSGSP GSGTSYPMCQ VDECKADLSS AKDYHRRHKV  180
CEVHSKTTKA VVGKQMQRFC QQCSRFHPLS EFDEGKRSCR RRLAGHNRRR RKVQADGASR  240
MLLSGNQDNN GNGNLDIVNL LSIFARLQGN GLDKLANLPS MPDKDQLAQI LGKINNIPDT  300
NSKVKSPVTR GFDLNVSQTP EVSEQLSEPS GIPLAPSTMD LMNVFSTSQK SSTPESTTAM  360
SQGSSGCSDD DKVKMNRSDR AADVNSHNQV TMTFSPGTGG ITHTVRSSFE VERTVQLAKS  420
AMSQQHYSSP ESNSPPKVGS SRKYLSSESS NPMEEVSPSS SPPVAQKLFP LHSETESLKN  480
ERMSIFRADT SMIEGSTTGR WDPSSHLVKD PERRTKNQVA QNLPYQAGGY TSSSGSDHSP  540
SSSKSDAHNR TGRITLKLFG KDPSNFPEDI KSQILNWLSH IPTEMESYIR PGCVILSVYL  600
SMSPTAWDDL QDDLLQRLHM FLQCSGSDFW RGRFLIRTDR ELASHKDGKV RICKSWETWS  660
SPELKYVSPL AVVSGKETSL LLRGRNLNVP GTKIHCTNMG GYTSKEVLCT AYPGTVYDDF  720
SMESFLFPGR MSNAFGRCFI EVENGFKGNS FPIIVANESI CQELRLLETE LEDMRKEEHV  780
QAQEHGRPLS TRENVIHFLN ELGWLFQRSS VEDFSCTRIK FLLIFSVERD WPVLVKKLLD  840
IFSEGRKNEA LIHESIETLA EIQLLSRAVK RKCRKMVDML LYYAVNNDTT KTFLFLPNLG  900
GPGGITPLHL AACTQDSQEM VDALTSDPQE IGINTWNSVL DESDMSPSAY ASMRNYHHYN  960
RLVSGKLSDS RNSQVSITVR DEEIALDKSW VVGESDGSVS SNNRNLAAVV PQSSSCSRCA  1020
IIESRIKKGT IHSQGLLRRP YIHSMLAIAA VCVCVCLILR GAPQLNMIAP FKWENLNFGP  1080
Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-31148232184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00664PBMTransfer from Potri.002G002400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010932155.10.0squamosa promoter-binding-like protein 15 isoform X1
RefseqXP_010932156.10.0squamosa promoter-binding-like protein 15 isoform X1
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A0K9Q3J60.0A0A0K9Q3J6_ZOSMR; Putative Squamosa promoter-binding protein
STRINGXP_008799143.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14