PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma10g00600.1
Common NameZOSMA_10G00600
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 272aa    MW: 30311.8 Da    PI: 9.6724
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma10g00600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.6e-32148201255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt+ LH rFv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Zosma10g00600.1 148 PRMRWTTSLHGRFVHAVKLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 201
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-15145201IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28146201IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-23148201IPR006447Myb domain, plants
PfamPF002497.7E-7149200IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MELFPTQPDL SLQISPPTTR NSGGHADGGE TFQNIDRNLI INTGKQGTQF DLSLERPTTT  60
TTTTPAVFRD HSARNREDGG WFYADNINRV VTMMRPITGI PVYHQNTPSS SSSSPLSFPL  120
HQNPISDSNG VYSRFFTRVP GKRSMRAPRM RWTTSLHGRF VHAVKLLGGH ERATPKSVLE  180
LMDVKDLTLA HVKSHLQMYR TVKTTDRLST SSPGRSNESS GEFSEDNNTV DYNNIIQPPG  240
KGEWMQDNPK GGEKPNLEFT LGRADHTDLR F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-17149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-17149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-17149203357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-17149203357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021887193.11e-58probable transcription factor KAN2 isoform X2
TrEMBLA0A0K9Q5K00.0A0A0K9Q5K0_ZOSMR; Uncharacterized protein
STRINGVIT_16s0039g01900.t013e-58(Vitis vinifera)
STRINGevm.model.supercontig_208.134e-58(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47213665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.13e-44G2-like family protein