PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma109g00350.1
Common NameZOSMA_109G00350
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 600aa    MW: 66285.6 Da    PI: 4.9464
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma109g00350.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS332.39.3e-1022155852373
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilk 92 
                        +lL++c + v s++  +++ ++++l e+asp++++++Rl++y+te+L  r++r +++ +  +pp +  +     ++ ++a++l+++vsPi+k
  Zosma109g00350.1 215 MSLLMACLQSVVSKNIPATNYFISKLGEHASPYQTSIHRLVSYYTEGLVIRISRLWPNFFCVFPPASVLDAGeyDDDGATAVRLLNHVSPIPK 307
                       689*********************************************************9997776654444688889999*********** PP

              GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                       f +++ N++Il+++eg++++HiiD+di++GlQWp+L+q+La R+ +p++lRiTgvg+    sk++l+ t+ rLa fA+ lg+pfef++ v++ 
  Zosma109g00350.1 308 FLQFAMNEMILRSFEGKDKLHIIDLDIKEGLQWPSLFQSLAHRKIPPAHLRITGVGH----SKQQLQDTATRLAGFADILGLPFEFHP-VVEV 395
                       *********************************************************....***************************.7999 PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       led+++++L+vkpgE++aVn+ +qlh+ + ++ +l++    +L l++++ P +vvv+e+eadh+++++  r++++l yy+a+fds+++ lp++
  Zosma109g00350.1 396 LEDVRFWMLHVKPGESVAVNCPMQLHTAV-SDETLQN----ILTLIQTTDPGIVVVSEEEADHDDPRWEMRLVSSLPYYAAVFDSIDVCLPPA 483
                       ****************************9.6666666....9************************************************987 PP

              GRAS 279 s.eerikvErellgreivnvvacegaerrerhetlekWrerlee....aGFkpvplsekaakqaklllrkvksdg..yrve....eesgslvl 360
                       +  +r+k+E++  grei+n+v+c   +   r ++++kW+  l++     GF++v +s ++++q   ll++++s g  ++v      +   ++l
  Zosma109g00350.1 484 AsPARVKIEEM-YGREIRNLVSCDVGS---RYKSFAKWEIILKNiggrGGFRNVGVSLTEVDQSTILLKMFSSSGknFKVGvqgdANATGITL 572
                       769********.9***********999...99*******99987333358**********************88844666565533455666* PP

              GRAS 361 gWkdrpLvsvSaW 373
                       +W d+pL++vS W
  Zosma109g00350.1 573 YWLDQPLYTVSGW 585
                       ************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.781188560IPR005202Transcription factor GRAS
PfamPF035143.2E-99215585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MLAGCSSAIA YYHQNQSSSQ MSSGTQRFDI TCGFTPRREA SRINIDERRN TNLGFRENYP  60
TTTAAATALV VKSVAPWEAK VEVEDAKKKS LKRFYYQQFL EDDTDDEDSG GVGKCRRKRS  120
RRSQLADEDV AFEDGGGFLG MPSTAAMVQG SLINPTGNNE DGDCSSDDNE NEKEIRNENE  180
NENENENAVV EMTTTCGGVS GCGSPRMERQ GLELMSLLMA CLQSVVSKNI PATNYFISKL  240
GEHASPYQTS IHRLVSYYTE GLVIRISRLW PNFFCVFPPA SVLDAGEYDD DGATAVRLLN  300
HVSPIPKFLQ FAMNEMILRS FEGKDKLHII DLDIKEGLQW PSLFQSLAHR KIPPAHLRIT  360
GVGHSKQQLQ DTATRLAGFA DILGLPFEFH PVVEVLEDVR FWMLHVKPGE SVAVNCPMQL  420
HTAVSDETLQ NILTLIQTTD PGIVVVSEEE ADHDDPRWEM RLVSSLPYYA AVFDSIDVCL  480
PPAASPARVK IEEMYGREIR NLVSCDVGSR YKSFAKWEII LKNIGGRGGF RNVGVSLTEV  540
DQSTILLKMF SSSGKNFKVG VQGDANATGI TLYWLDQPLY TVSGWVPANT AARSSGDGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5420658711380Protein SCARECROW
5b3h_A1e-5420658710379Protein SCARECROW
5b3h_D1e-5420658710379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9CAN31e-119SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A0K9Q5S90.0A0A0K9Q5S9_ZOSMR; Scarecrow transcription factor family protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-115GRAS family protein