PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma108g00010.1
Common NameZOSMA_108G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 80aa    MW: 9179.3 Da    PI: 8.9339
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma108g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.33.1e-07449346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                       WT+    l+ +a + + ++   +W  Iar +g  ++ +++k ++  
  Zosma108g00010.1  4 TWTAKQNRLFENALAVYDKEtpeRWQNIARAVG-VKSVEEVKRHYEL 49
                      6*****************99*************.89********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.443157IPR017884SANT domain
SMARTSM007171.3E-4153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-4350IPR009057Homeodomain-like
CDDcd001671.49E-5451No hitNo description
SuperFamilySSF466893.86E-11558IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MATTWTAKQN RLFENALAVY DKETPERWQN IARAVGVKSV EEVKRHYELL LWDIRQIESG  60
HVSFPPNYEK PYASSGGNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-255781179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160753.12e-31hypothetical protein PHAVU_001G014300g
SwissprotF4JVB89e-28RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A0K9Q3U52e-52A0A0K9Q3U5_ZOSMR; MYB transcription factor
STRINGXP_007160753.18e-31(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.14e-30RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]