PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma107g00630.1 | ||||||||
Common Name | ZOSMA_107G00630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 254aa MW: 28810.4 Da PI: 7.8673 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +v+++G+g+W+ ++ g+ R+ k+c++rw +yl Zosma107g00630.1 14 KGPWTPEEDITLVSYVQEHGPGNWRCVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.8 | 3.9e-16 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg++T++E+++++++ ++lG++ W++Ia++++ Rt++++k++w+ Zosma107g00630.1 67 RGNFTPQEEQKIIRLQTLLGNK-WAAIASHLP-QRTDNDIKNFWN 109 89********************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.681 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-30 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.32E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.724 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.98E-10 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MGRPPFNDQI CIKKGPWTPE EDITLVSYVQ EHGPGNWRCV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TPQEEQKIIR LQTLLGNKWA AIASHLPQRT DNDIKNFWNI HLKKKLLRTN 120 MESAGNNCRI ELTDSLSSID NIHSPLLGKD STTTPKPTIA ASNGPSSMYV LSTENISQLL 180 KTWKRSPHDT KSSSSSNADF NDINKNTHDG NKERHIDYSH LESILPFDPN LEEDFSTRWN 240 TAELEMEIDG VFC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-23 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-23 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-23 | 14 | 116 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431144.1 | 3e-77 | myb-related protein 306 | ||||
Refseq | XP_020087041.1 | 3e-77 | myb-related protein 306-like | ||||
Swissprot | B3VTV7 | 3e-75 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | A0A0K9Q5Z5 | 0.0 | A0A0K9Q5Z5_ZOSMR; Uncharacterized protein | ||||
STRING | Lus10009522 | 1e-77 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 4e-76 | myb domain protein 60 |
Link Out ? help Back to Top | |
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Phytozome | Zosma107g00630.1 |
Publications ? help Back to Top | |||
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