PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma105g00590.1
Common NameZOSMA_105G00590
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MIKC_MADS
Protein Properties Length: 287aa    MW: 33237.7 Da    PI: 9.5259
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma105g00590.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.17.2e-314595151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+++fss+g+lyeys+
  Zosma105g00590.1 45 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALVVFSSRGRLYEYSN 95
                      79***********************************************95 PP
2K-box112.34.9e-371142106100
             K-box   6 gks..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                       +++  +e+ +++++qqe+akL+ +i+ Lq+ +Rhl+G++L+sLs+keL+qLe++L++++++iRskK+ell+++ie +qk+e elq++n++Lr+
  Zosma105g00590.1 114 NSRiiVETDTQQYYQQEAAKLRHQIQILQNANRHLMGDSLSSLSVKELKQLENRLDRGISRIRSKKHELLFAEIEFMQKREVELQNDNMYLRT 206
                       33356889999********************************************************************************** PP

             K-box  97 klee 100
                       k++e
  Zosma105g00590.1 207 KIAE 210
                       *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.813797IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-423796IPR002100Transcription factor, MADS-box
CDDcd002655.21E-4538114No hitNo description
SuperFamilySSF554551.83E-3238110IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003993IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-323959IPR002100Transcription factor, MADS-box
PfamPF003193.2E-264693IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-325974IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-327495IPR002100Transcription factor, MADS-box
PfamPF014866.8E-28120208IPR002487Transcription factor, K-box
PROSITE profilePS5129716.004124214IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMEVKYFAIL TLKHQQQARQ TYEVEGRGDI CRGERRMGRG KIEIKRIENT TNRQVTFCKR  60
RNGLLKKAYE LSVLCDAEIA LVVFSSRGRL YEYSNNSIKS TIERYKKAHA DSSNSRIIVE  120
TDTQQYYQQE AAKLRHQIQI LQNANRHLMG DSLSSLSVKE LKQLENRLDR GISRIRSKKH  180
ELLFAEIEFM QKREVELQND NMYLRTKIAE NERAQQVSMV HAGPDFESLQ AFDCRNYFPV  240
NMLEAAASHY PTAAASIHHH QDQTALHLGY DTKSNQVADR ITNFHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-2137118185MEF2C
5f28_B4e-2137118185MEF2C
5f28_C4e-2137118185MEF2C
5f28_D4e-2137118185MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020244972.11e-141MADS-box transcription factor 21-like isoform X2
SwissprotF6I4571e-114AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLA0A0K9Q4Y30.0A0A0K9Q4Y3_ZOSMR; AGAMOUS MADS box factor transcription factor
STRINGXP_008781978.11e-140(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-103MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]