PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma104g00390.1
Common NameZOSMA_104G00390
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 211aa    MW: 24462.6 Da    PI: 7.694
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma104g00390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.3e-13125169347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT++E+ l++++  ++G g+W++I+r +  +Rt+ q+ s+ qky
  Zosma104g00390.1 125 AWTEDEHRLFLQGLDMYGRGDWRSISRNLVITRTPTQVASHAQKY 169
                       6*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.89262IPR017877Myb-like domain
SMARTSM0071721664IPR001005SANT/Myb domain
SuperFamilySSF466892.73E-6868IPR009057Homeodomain-like
PROSITE profilePS5129418.395118174IPR017930Myb domain
SuperFamilySSF466896.03E-16120175IPR009057Homeodomain-like
SMARTSM007171.8E-10122172IPR001005SANT/Myb domain
TIGRFAMsTIGR015575.2E-16123172IPR006447Myb domain, plants
PfamPF002495.8E-12125169IPR001005SANT/Myb domain
CDDcd001676.13E-9125169No hitNo description
Gene3DG3DSA:1.10.10.601.0E-9125171IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEGEGRNNLW TWEENKIFEM ALIPNCIETM NSSKQFEFWE EIAGQVHGKT VDDVKHHFEL  60
LLEDINNIDL GLVDLPDYRC SSKFCTNHLA QPEQGKAYSP VPSIIISATN MNTQHTELER  120
RRAIAWTEDE HRLFLQGLDM YGRGDWRSIS RNLVITRTPT QVASHAQKYY KRLKSSGKEK  180
RRSSIHDIKI KQQISTENDH TQQPKPAQRK *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015947035.12e-56transcription factor SRM1
RefseqXP_015947036.12e-56transcription factor SRM1
RefseqXP_016181553.12e-56transcription factor SRM1
RefseqXP_020968725.12e-56transcription factor SRM1
RefseqXP_020968726.12e-56transcription factor SRM1
RefseqXP_020988223.12e-56transcription factor SRM1
RefseqXP_025624932.12e-56transcription factor SRM1
RefseqXP_025624933.12e-56transcription factor SRM1
RefseqXP_025624934.12e-56transcription factor SRM1
RefseqXP_025682557.12e-56transcription factor SRM1
RefseqXP_029152247.12e-56transcription factor SRM1
SwissprotQ9FNN68e-52SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A0K9Q4T41e-158A0A0K9Q4T4_ZOSMR; Myb family transcription factor
STRINGGLYMA20G01450.11e-55(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-54MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]