PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma104g00010.1

Common Name

ZOSMA_104G00010

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 635aa MW: 71525.2 Da PI: 8.8114

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma104g00010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.3	6e-14	310	402	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+ + Fs+r ++k+ + ++ +++++ Csk+g+++ t+ +rr+++++r+gC a++k k+ + +++w+ +++ +HnH+++ Zosma104g00010.1 310 YYDFASAMRFSIRLGSTKNVvdkgSGQKVLVMKRLLCSKQGSQSLILPPTNGNRRKNVVSRCGCLASIKFKRIDrSDNWVANTVIFHHNHSFT 402 999*********999888776666778999*********999999******************99*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-10	310	403	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-6	524	561	IPR018289	MULE transposase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MKKTKSLSIQ HRFCHIVLFT IHLSIVGFAT LYNLPISLFF VFLPQRLLLQ SPNTSSSFFS 60 ILSRSSNPSS GFIMVSPPSF ANQDQPSILQ VSPNTNSIFV TPPPYRSQQF SYDHTNTSCN 120 VSLKVRFNSP QCQTNDNTIP CEADFSTFSL PHVTAGTIFQ SGFVLHTSAE IRESSAHINV 180 VTAKIPSSLN FQFNSPDRQT NVNPSACSDN VSTPLDDDVV CSTFFYSEFV KSTSDDITQS 240 SAEILPTSAN LGCGTDKTPD NYCKRKYSSP VHDHSSPDHR NASSSFSQCN KPCPVVGQVF 300 PSYELAVQSY YDFASAMRFS IRLGSTKNVV DKGSGQKVLV MKRLLCSKQG SQSLILPPTN 360 GNRRKNVVSR CGCLASIKFK RIDRSDNWVA NTVIFHHNHS FTPPSKIRYL PINRSISQTS 420 KLLFSSLAEV NVPVSQQAAY FSNQLGGVQN IGCMKMDINN MVRDDRIDLK NYDVDLIVEE 480 FEMNKSENEQ FFYDLVKDDE GRLKHLFWVD PTMIENYKLF GDSVTFDTTY KTNVYSMVFG 540 MFCGVNHHRK TTIFGSAFVR QKFGFRKLPT FDHQFGKLAT SVLVRTSPIG YYRYNRLLND 600 MSKKYMIYVK KIHGIEWLND WNGMELTIGM ELNG*

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MKKTKSLSIQ HRFCHIVLFT IHLSIVGFAT LYNLPISLFF VFLPQRLLLQ SPNTSSSFFS  60
ILSRSSNPSS GFIMVSPPSF ANQDQPSILQ VSPNTNSIFV TPPPYRSQQF SYDHTNTSCN  120
VSLKVRFNSP QCQTNDNTIP CEADFSTFSL PHVTAGTIFQ SGFVLHTSAE IRESSAHINV  180
VTAKIPSSLN FQFNSPDRQT NVNPSACSDN VSTPLDDDVV CSTFFYSEFV KSTSDDITQS  240
SAEILPTSAN LGCGTDKTPD NYCKRKYSSP VHDHSSPDHR NASSSFSQCN KPCPVVGQVF  300
PSYELAVQSY YDFASAMRFS IRLGSTKNVV DKGSGQKVLV MKRLLCSKQG SQSLILPPTN  360
GNRRKNVVSR CGCLASIKFK RIDRSDNWVA NTVIFHHNHS FTPPSKIRYL PINRSISQTS  420
KLLFSSLAEV NVPVSQQAAY FSNQLGGVQN IGCMKMDINN MVRDDRIDLK NYDVDLIVEE  480
FEMNKSENEQ FFYDLVKDDE GRLKHLFWVD PTMIENYKLF GDSVTFDTTY KTNVYSMVFG  540
MFCGVNHHRK TTIFGSAFVR QKFGFRKLPT FDHQFGKLAT SVLVRTSPIG YYRYNRLLND  600
MSKKYMIYVK KIHGIEWLND WNGMELTIGM ELNG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q670	0.0	A0A0K9Q670_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-35	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma104g00010.1