PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma103g00690.1
Common NameZOSMA_103G00690
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 309aa    MW: 35647.7 Da    PI: 6.7477
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma103g00690.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.77.2e-47101412128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        pGfrFhPtdeelv +yL++k+e+k l++ ++ik+vdiyk++P+dL k  +v  e+kew+fF+ + +ky+++ r+nr+t+sg+Wkatg dk++
  Zosma103g00690.1  10 LPGFRFHPTDEELVGFYLQRKLEKKLLKV-DIIKQVDIYKYDPSDLSKmsTVGVENKEWFFFCLQGRKYPNSARPNRVTDSGFWKATGIDKKI 101
                       59***************************.99**************84345666899************************************ PP

               NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + +    +++ +glkk+Lv+y+g+a kg+ tdW+mhe+rl
  Zosma103g00690.1 102 YFTstksQDNCIGLKKSLVYYRGSAGKGTITDWMMHEFRL 141
                       99865545555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.1889166IPR003441NAC domain
SuperFamilySSF1019411.96E-4810166IPR003441NAC domain
PfamPF023651.3E-2311141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MNREDDNIQL PGFRFHPTDE ELVGFYLQRK LEKKLLKVDI IKQVDIYKYD PSDLSKMSTV  60
GVENKEWFFF CLQGRKYPNS ARPNRVTDSG FWKATGIDKK IYFTSTKSQD NCIGLKKSLV  120
YYRGSAGKGT ITDWMMHEFR LPPNKHVGNL RFDGAENLTI CRIFKRNKTV CGSTKTSTAP  180
KKSPGSEAVK ATRPVYEYDT DIGCEDWTDS SSSVATLAFQ QQRSNQDRQQ LRVNQNSRFQ  240
PEQQQEQNPN DYRQYWTRGV VYADDIGMEN PTCSQSFGFE TEYDGSDNID WDEIGRYLDQ  300
CCDKEPSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-411117019169NO APICAL MERISTEM PROTEIN
1ut4_B3e-411117019169NO APICAL MERISTEM PROTEIN
1ut7_A3e-411117019169NO APICAL MERISTEM PROTEIN
1ut7_B3e-411117019169NO APICAL MERISTEM PROTEIN
3swm_A3e-411117022172NAC domain-containing protein 19
3swm_B3e-411117022172NAC domain-containing protein 19
3swm_C3e-411117022172NAC domain-containing protein 19
3swm_D3e-411117022172NAC domain-containing protein 19
3swp_A3e-411117022172NAC domain-containing protein 19
3swp_B3e-411117022172NAC domain-containing protein 19
3swp_C3e-411117022172NAC domain-containing protein 19
3swp_D3e-411117022172NAC domain-containing protein 19
4dul_A3e-411117019169NAC domain-containing protein 19
4dul_B3e-411117019169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894515.17e-76transcription factor JUNGBRUNNEN 1 isoform X1
TrEMBLA0A0K9Q5080.0A0A0K9Q508_ZOSMR; Transcription factor JUNGBRUNNEN 1
STRINGGLYMA14G03441.19e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.16e-70NAC domain containing protein 42