PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma103g00580.1 | ||||||||
Common Name | ZOSMA_103G00580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 525aa MW: 59537.6 Da PI: 6.5088 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.3 | 1.2e-56 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yLk+k++g+++el e+i+evd+yk+ePwdLp+ + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++ Zosma103g00580.1 6 LPPGFRFHPTDEELVSYYLKRKLNGRQIEL-EIIPEVDLYKCEPWDLPEksYLPSKDLEWYFFSPRDRKYPNGTRTNRATQAGYWKATGKDRK 97 79****************************.99***************5234555777*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v s ++++vg+kktLv+++grap+g++tdWvmheyrl Zosma103g00580.1 98 VSS-QKREVGMKKTLVYHRGRAPHGSRTDWVMHEYRL 133 **9.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-64 | 4 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.223 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-29 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 525 aa Download sequence Send to blast |
MAPVSLPPGF RFHPTDEELV SYYLKRKLNG RQIELEIIPE VDLYKCEPWD LPEKSYLPSK 60 DLEWYFFSPR DRKYPNGTRT NRATQAGYWK ATGKDRKVSS QKREVGMKKT LVYHRGRAPH 120 GSRTDWVMHE YRLDERECES SSGLQDAYAL CRVFKKSAPG PKIIEHYGAT CHHQPNINNN 180 KNNSWAPELS FDQHGFEMSS SRDPYHFVHG STSASSHHVD PFGSSREGTG CGSSWMQYLN 240 TTDDHTTAFS STNNIPSLIM DQQPPTTFDF VPSKVDIALE CARLQHRFSL PPLEVEDFPQ 300 FDTVNFLQSG EKNQLDALQE ILSVASASAS GYEDVWAELG VGTTTINTSI PSTDSYPPEQ 360 MQERLIQIDE FEVGDKLTSS GDPGNDCQNF PTSALINIVE ESEEKEDDEN IGFINFSQGS 420 FIATHNISET FFHYVQPSTK ISVHVHPIEP QTVKMNENRR SGTGRKWGMK VKNMVMRCRS 480 WVTDVKKKHF STLFFNKRCS LLTVAVALCA SGFHYRLISF ISSY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-56 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-56 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 6e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 6e-56 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00212 | DAP | Transfer from AT1G65910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006649289.1 | 1e-150 | PREDICTED: NAC domain-containing protein 86-like | ||||
TrEMBL | A0A0K9Q696 | 0.0 | A0A0K9Q696_ZOSMR; Uncharacterized protein | ||||
STRING | OB03G11530.1 | 1e-149 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6624 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-110 | NAC domain containing protein 28 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma103g00580.1 |