PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma103g00550.1
Common NameZOSMA_103G00550
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Nin-like
Protein Properties Length: 792aa    MW: 88894.2 Da    PI: 7.3087
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma103g00550.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK932.2e-29564614252
            RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       ek+isl+ l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  Zosma103g00550.1 564 EKSISLHLLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIARWPSRKIKKV 614
                       799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.019549634IPR003035RWP-RK domain
PfamPF020425.4E-26567614IPR003035RWP-RK domain
SuperFamilySSF542774.25E-19694786No hitNo description
Gene3DG3DSA:3.10.20.2408.5E-17704784No hitNo description
PROSITE profilePS5174515.169706787IPR000270PB1 domain
SMARTSM006661.3E-16706787IPR000270PB1 domain
CDDcd064073.32E-30707785No hitNo description
PfamPF005641.5E-12708785IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 792 aa     Download sequence    Send to blast
MLYCLALGRE EKRGTFLEAG AIDCRLIVLS RDTNVRFGLV IQICTRSVCM TGSIDDLAME  60
FDVFNDLFFA NEEFPVIPQD PGHSTNCMFA DPENIEKIDF SIVNASSSSS EARKEEGKVC  120
RKSDPSVNEK MTLAVRYIME SHKEDDVLIQ FWIPKKIHDS ERTVLTTYDQ PFELDSNCRR  180
LVDYRTVSTT YNFSADIDSD GAFGLPGRVF VGKVPEWTPD VRLFSSFEYP RVNHAQHFDI  240
RGSLALPVFD LANKSCLGVL EVVMTTGKNE YSSDLDNICK ALRAVDLGSS EILIVPRVKL  300
GGDSYRSVLP EIHHVLRTAC TQHNLPLAQT WIPCHQQGKT GSRHISENYN ECISTVDLAC  360
YVNDPAVFSF HRACSEHHLL KGQGVAGKAF TTNQPCFVSD MASFSRMEYP LSHHAKMFNL  420
TSAVAVRLRS IHTRTDDFVL ELFLPSDCIG VEEQKLMLNS LSRTIQHHCR SLRVLYAHEI  480
TEIEIESIDA TTLNQPLPRQ SLHGGGATNN LISRWDAGIV QEEADIHHHQ NLNIPIPSKT  540
KIINSEKGVS QGIEKRRATK PKTEKSISLH LLQQYFSGSL KDAAKSLGVC PTTLKRICRQ  600
HGIARWPSRK IKKVSHSLKK LQLVINSVQG TDQEHFPLSS FYTNLSDAHK LHSFTQPDTN  660
GFGSVPASAS SGSWSYSSKP SILIEDKTAG PTNHNNSSTK KGFEHGFRFK VICGEEIVRF  720
RFMLSGYKQL KKEIADRFKL ALTCFDLKYL DDESEWVLLT CDADVRECVH IYRSSGIPTV  780
KIVVQLHDLK N*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092946.10.0protein NLP1-like
SwissprotQ9SFW80.0NLP5_ARATH; Protein NLP5
TrEMBLA0A0K9Q5850.0A0A0K9Q585_ZOSMR; Nodule inception protein
STRINGGSMUA_Achr3P14760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein