PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma101g00810.1 | ||||||||
Common Name | ZOSMA_101G00810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 177aa MW: 20338.8 Da PI: 5.6082 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 173.8 | 1.8e-54 | 48 | 151 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ql++fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt rsw haeenkrrtl+k+diaaa+trtd+fd Zosma101g00810.1 48 QLQMFWADQyreIEQTTDFKNHSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRSWAHAEENKRRTLQKNDIAAAITRTDVFD 140 89*****99999********************************************************************************* PP NF-YC 91 flvdivprdel 101 flvdivpr++ Zosma101g00810.1 141 FLVDIVPREDA 151 ********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.31E-33 | 25 | 142 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.7E-21 | 70 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.6E-37 | 71 | 148 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MEPKDQPQQQ QQHTVMGVAA TVPYGTANAP YQAYHQIYQQ QQQQQQQQLQ MFWADQYREI 60 EQTTDFKNHS LPLARIKKIM KADEDVRMIA AEAPVVFARA CEMFILELTH RSWAHAEENK 120 RRTLQKNDIA AAITRTDVFD FLVDIVPRED ARDEVIPRTL GGGGPTDPLS YYYGQQ* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-59 | 56 | 148 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 120 | 126 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010913291.1 | 1e-86 | nuclear transcription factor Y subunit C-6 | ||||
Swissprot | Q8L4B2 | 1e-65 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A0K9Q6F0 | 1e-128 | A0A0K9Q6F0_ZOSMR; Nuclear transcription factor Y subunit C-2 | ||||
STRING | XP_008802191.1 | 2e-78 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G54830.3 | 2e-66 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma101g00810.1 |