PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM6G787651_P01 | ||||||||
Common Name | Zm.17445 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 478aa MW: 49984.8 Da PI: 8.1057 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.8 | 2.7e-39 | 68 | 128 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+ss GRMZM6G787651_P01 68 PDKILPCPRCNSMDTKFCYYNNYNIKQPRHFCKSCQRYWTAGGSMRNIPVGAGRRKSKSSS 128 7899*****************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-26 | 65 | 117 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.3E-32 | 70 | 126 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.509 | 72 | 126 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 74 | 110 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence Send to blast |
MSVTGEKPCT HRESDVGQTN SCSLNNSSEC ENHTPSNDEI SEPESNLEMA KTDQGGDVPS 60 GEKVLKKPDK ILPCPRCNSM DTKFCYYNNY NIKQPRHFCK SCQRYWTAGG SMRNIPVGAG 120 RRKSKSSSAS CRSVLIPVPG SSSVANPGGE ASLFPLSVKA NQAAVSFGPD SPLCTSMASV 180 LKIGGGGEQV KSCSPASAAA QPRNGETQTQ TCAPSSAATT PSDGPGNGLQ KGAESAHQNQ 240 NQNQNGIIGH SNGVTPVHPI PFFPGPPFVY PWSPAWNGIP AMAAAVCAAP ATAEAAISSE 300 HGTASSTVQW NVPPAIVPVL PPGFCGPIPV PVIPPPSVWP LITPWPNAAW SAPWLGPSAS 360 VPPGSSRSSG SSTCSDSGCG SGSPVLGKHS RESRPQGDEK AERRCLWIPK TLRIDDPVEA 420 AKSSIWTTLG IEPGDRGMFR PFQSKHGRQQ ELQASGAARA LQANPAALSR SQSFQETT |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.17445 | 0.0 | aerial organ| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM6G787651 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM6G787651_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT064583 | 0.0 | BT064583.1 Zea mays full-length cDNA clone ZM_BFc0185L15 mRNA, complete cds. | |||
GenBank | HQ858680 | 0.0 | HQ858680.1 Zea mays clone UT1136 C2C2-Dof transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001143564.1 | 0.0 | uncharacterized protein LOC100276261 | ||||
TrEMBL | C0P8G4 | 0.0 | C0P8G4_MAIZE; Uncharacterized protein | ||||
STRING | AC155434.2_FGP006 | 0.0 | (Zea mays) | ||||
STRING | GRMZM6G787651_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39660.2 | 8e-35 | cycling DOF factor 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM6G787651_P01 |