PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM6G613247_P02
Common NameZm.32398
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family HRT-like
Protein Properties Length: 538aa    MW: 59552.4 Da    PI: 10.2414
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM6G613247_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like45.31.4e-14299328131
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                        +CGv+ledG +C ++Pv+gRKRC  HKG+R+
  GRMZM6G613247_P02 299 VCGVLLEDG-FCLEHPVHGRKRCSLHKGKRV 328
                        7********.7*******************7 PP
2HRT-like49.56.9e-16500529130
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                        +CG++++dGs C++ P++gRKRC+ HKG+R
  GRMZM6G613247_P02 500 TCGARTSDGSRCMNMPIEGRKRCALHKGQR 529
                        7****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004650.001774179IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MPAPVAPVTS RLKREDCPRT KHDSLFSPWK VLVGPSDWRD HAAGKEGVQR YRIRNLPDNF  60
PGLYELGVAC AADEGVRSRR RDARGVVVVY LGQADSVRAR LQQYGRSGSH LDTTNSPGSS  120
DRDAANALAE GPGLFREVFS RGYSVVFRCA LMDNKQEAEK TEALLLRVFD YAWNKLQNGA  180
CRRQEILHKL ELRAANHRSL LSRVSDMKQK IFGQKAGINI KGSGPANTSP SIIKSMLPRV  240
RTIVRFRPQL VNPNNSEGGI TGIPYANRQA HRRKSKGYQV KKFDVTKRRT VPIHDSNSVC  300
GVLLEDGFCL EHPVHGRKRC SLHKGKRVKG SPKSSPTSHP CQVGIAITEF CLTEDLDSSV  360
PKQESEIRPK NMSTTLKEPQ RQSDNLESQK VNTGEASTED GTQEVSRDAC ILEEKAFFHA  420
DSESQEQQPS GRMWFELLKS QRKPASAHPS RRGLGSQITA MTDNRSCKMV SIAGMERTEK  480
DSGVEVTAAS FSRSSGWPCT CGARTSDGSR CMNMPIEGRK RCALHKGQRA AFPPTPSA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.323980.0ear| endosperm| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM6G613247
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM6G613247_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8587570.0HQ858757.1 Zea mays clone UT1499 HRT transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001130774.20.0uncharacterized protein LOC100191878
TrEMBLA0A3L6E3950.0A0A3L6E395_MAIZE; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLF1DJZ90.0F1DJZ9_MAIZE; HRT transcription factor (Fragment)
STRINGGRMZM6G613247_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Representative plantOGRP52481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-63effector of transcription2