PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM6G287292_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | BES1 | ||||||||
Protein Properties | Length: 256aa MW: 27005.5 Da PI: 10.3186 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 207.7 | 3.2e-64 | 13 | 155 | 1 | 145 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 g++gr+ptw+ErEnnkrRERrRRaiaaki+aGLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyr+gskp+e+++ +g+s s sp+s GRMZM6G287292_P01 13 GAGGRMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRQGSKPMERMDPIGCSVSPSPCS 104 689***************************************************************************************** PP DUF822 93 slqsslkssalaspvesysaspksssfpspssldsislasa......asllpvlsvlsl 145 s+q +sp++sy+asp+sssfps +s+ +++ ++ + +lp+l++ s+ GRMZM6G287292_P01 105 SYQ--------PSPRASYNASPTSSSFPSGASSPFLPPNEMpngidgNPILPWLKTFSN 155 ***........999999999999999999999998887766777887888888888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 6.5E-63 | 15 | 153 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MASGGGGGLG AAGAGGRMPT WRERENNKRR ERRRRAIAAK IFAGLRAHGG YKLPKHCDNN 60 EVLKALCNEA GWVVEPDGTT YRQGSKPMER MDPIGCSVSP SPCSSYQPSP RASYNASPTS 120 SSFPSGASSP FLPPNEMPNG IDGNPILPWL KTFSNGTPSK KHPLLPPLLI HGGSISAPVT 180 PPLSSPSART PRMKTDWDEA AVQPPWHGAS SPTIVNSTPP SPGRPIAPDP AWLAGIQISS 240 TSPNSPTFSL VSTNPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 2e-23 | 17 | 88 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 2e-23 | 17 | 88 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 2e-23 | 17 | 88 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 2e-23 | 17 | 88 | 372 | 443 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.13340 | 0.0 | ear| endosperm| leaf| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM6G287292 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM6G287292_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036557 | 0.0 | BT036557.1 Zea mays full-length cDNA clone ZM_BFb0123H10 mRNA, complete cds. | |||
GenBank | EU968491 | 0.0 | EU968491.1 Zea mays clone 321364 brassinazole-resistant 1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001132634.1 | 0.0 | Protein BRASSINAZOLE-RESISTANT 1 | ||||
Swissprot | Q0JPT4 | 1e-107 | BZR2_ORYSJ; Protein BZR1 homolog 2 | ||||
TrEMBL | A0A2D0Z7N3 | 0.0 | A0A2D0Z7N3_MAIZE; BES1/BZR family protein BES1/BZR11 (Fragment) | ||||
TrEMBL | B4FHG9 | 0.0 | B4FHG9_MAIZE; Brassinazole-resistant 1 protein | ||||
STRING | GRMZM6G287292_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1366 | 38 | 112 | Representative plant | OGRP1595 | 15 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78700.1 | 8e-49 | BES1/BZR1 homolog 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM6G287292_P01 |
Entrez Gene | 100194109 |
Publications ? help Back to Top | |||
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